View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3611_low_5 (Length: 430)
Name: NF3611_low_5
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 4569576 - 4569173
Alignment:
| Q |
17 |
tggtggagccagtgtgggatagagagaagttgttgggtccaagggatgtgccacgagtggattcggcgttggtaagagagtttttgagtttggataaaga |
116 |
Q |
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| T |
4569576 |
tggtggagccagtgtgggatagagagaagttgttgggtccaagggatgtgccacgagtggattcggcgttggtaagagagtttttgagtttggataaaga |
4569477 |
T |
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| Q |
117 |
ggttttggtgtatgaagaagatgatggtggttttgtgagagagtgttttcatgtgaaggatgagtgtttggaagagtttaagagatctttgtttgatcaa |
216 |
Q |
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| T |
4569476 |
gtttttggtgtatgaagaaggtgatggtggtgttgtgagagagtgttttcatgtgaaggatgagtgtttggaagagtttaagagatctttgtttgatcaa |
4569377 |
T |
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| Q |
217 |
tgtgggttcaagttcaccacttttgaagctttaggtgcttgcatttggaggtccaagtaagtttctattagctgtgttatttattatgacacaaattgag |
316 |
Q |
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| T |
4569376 |
tgtgggttcaagttcaccacttttgaagctttaggtgcttgcatttggaggtccaagtaagtttctattagctgtgt----tattatgacacaaattgag |
4569281 |
T |
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| Q |
317 |
aacaa----------gcaaataaattagatggttaatatagttaaaatttgtgtttaattacgtttagtattggttaatgaatgtaattaaggctcgcca |
406 |
Q |
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| T |
4569280 |
aacaaaattttatttgcaaataaattagatggttaatatagttaaaatttgtgtttaattacgtttattattggttaatgaatgtaattaaggctcgcca |
4569181 |
T |
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| Q |
407 |
ttcacaag |
414 |
Q |
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| T |
4569180 |
ttcacaag |
4569173 |
T |
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