View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3611_low_6 (Length: 405)
Name: NF3611_low_6
Description: NF3611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3611_low_6 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] chr3 (8 HSPs) |
| |
|
| [»] scaffold0028 (1 HSPs) |
| |
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| [»] chr2 (7 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
| | |
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| [»] scaffold0012 (1 HSPs) |
| | |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 49388093 - 49388479
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||| |
|
|
| T |
49388093 |
agatgtaatgcatcagaacggtgtagcaagctatggaacccgtcttagactaatgagacttaacacacagtgaattggtttaacaagctatggaacccaa |
49388192 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
49388193 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgctgttacgcggttgtgcgctaagaggccgtgtgcgtgcctgatat |
49388292 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
||||||||| |||||||| |||| | |||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49388293 |
tcatgagtgttctagagacccgccatggtctcatgcaagcggccccacttgacactcatataagtgattccatttagtgtatgctacgaccatacatcac |
49388392 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctcatttttattatttagcacatctcatccattatcatacac |
402 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49388393 |
ccataatggcttatggtaatcattaaaaacctttaaagcttatccctcatttttattatttagcacatctcatccattatcatacac |
49388479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 38826011 - 38826398
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||| ||||| |||| |||||||||||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
38826011 |
agatgtaatgcatcgaaacgatgtagcaagctatggaacccgtcctagataaatgagacttaacacacattgaattggtttagcaagctatggaacccaa |
38826110 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||| | || ||| |
|
|
| T |
38826111 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattc---ttgttacgcggttgtgtgctaatagaccgtgcgcgtacttggtat |
38826207 |
T |
|
| Q |
217 |
tcatgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||| ||||||||||||| ||| |||||| |||||| |||||||||||||||||| ||| |
|
|
| T |
38826208 |
tcatgagtgctctagagaccagccacaatctcatgcaagcggccccacttgacactcacataagtgattttatctagcgtatgctacgaccatacaccac |
38826307 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38826308 |
ccataagggcttatggtaatcatt-aaagtctttaaaacttatccctcaattttatattatttagcacatctcatccattatcatacactat |
38826398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 1968352 - 1968023
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||| | ||| || |||||| |||||||||||| || || |||||||||||||||||| ||||||| |
|
|
| T |
1968352 |
agatgtaatgcatcggaacagtatagcaagctatggaacctgtcctaaactaataagacttaacacacagtgagttggtttagcaagctatgaaatccaa |
1968253 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
1968252 |
gacacttattgtatgttagaggtctcacaatcacattacacccccacaattcttgctgttacgcggttgtccgctaataggtcgtgcgcgtgcctgatat |
1968153 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | || ||| ||| |
|
|
| T |
1968152 |
tcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgtatgttacaatcaaacaccac |
1968053 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagc |
345 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
1968052 |
ccataagtgcttatggtaatcattaaaagc |
1968023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 24172631 - 24172260
Alignment:
| Q |
20 |
tgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaagac |
119 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| ||||| |||||| ||||||||||||||| || |||||||||||||||||||||||| |||| || |
|
|
| T |
24172631 |
tgtaatgcatcggaatggtgtagcaagctatggaacccgtcctagactgatgagacttaacacacagtgaattggtttagcaagctatggaacccaatac |
24172532 |
T |
|
| Q |
120 |
acttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctgatattc |
218 |
Q |
| |
|
||||| ||||||| |||||| | ||||||||||||||||||||||||||| || || | ||| || ||||| ||||||||| ||||| || | ||| |
|
|
| T |
24172531 |
acttgatgtatgctagaggtttaacaatcacattacacccccacaattctcgt-gtaatcgctgtgttgcgcatttaggccgtgtgcgtgtctcgttttc |
24172433 |
T |
|
| Q |
219 |
atgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcaccc |
317 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||| |
|
|
| T |
24172432 |
atgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgatttcatctaatgtatgctacaaccatacaccaccc |
24172333 |
T |
|
| Q |
318 |
ataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcat |
388 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||| || |||||| ||| ||||||||||||| |||||| |
|
|
| T |
24172332 |
ataaaggctaatggcaatcattaaaagcctttaaagcttacccctcaattttatattatttagcacttctcat |
24172260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 89 - 364
Target Start/End: Complemental strand, 47325441 - 47325157
Alignment:
| Q |
89 |
aattggtttagcaagctatggaatccaagacacttgttgtatgcaagaggtctcacaatcacattacaccccc-acaattcttgttgtta-cgcggttgt |
186 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||| || | ||| || | |
|
|
| T |
47325441 |
aattggtttagcaagctatggaacccaatacacttgatgtatgttagaggtctcataatcacattacaccccccacaattcttgt-gtcatcgctgtgtt |
47325343 |
T |
|
| Q |
187 |
gcgctaataggccgtgag--------cgtgcctgatattcatgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatata |
277 |
Q |
| |
|
|||| ||||||||| | |||| ||| | ||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
47325342 |
gcgcatttaggccgtgcgggcgtgcgcgtgtctggttttcatgagtgctctagagacctgccacggtctcatgcaagcggccctacttcacactcatata |
47325243 |
T |
|
| Q |
278 |
ggtgattccatctagtgtatgctacgaccatacatcacccataagggcttatggtaatcattaaaagcctttaaagcatatccctca |
364 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||| ||||| ||| |||||||||||| ||||||| || || ||||| || |||||| |
|
|
| T |
47325242 |
ggtgattccatctagtgcatgctacaaccacacaccaccc-taaaggcttatggtaaccattaaaggcattaaaagcctaaccctca |
47325157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 1968006 - 1967970
Alignment:
| Q |
369 |
tattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1968006 |
tattatttagcatatctcatccattatcatacactat |
1967970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 32352966 - 32353357
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| || ||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
32352966 |
agatgtaatgcatcggaacaatgtagcaagctatgaaacccgtcctagactaatgagacttaacacacagtgaattggtttagcaagctatggaacccaa |
32353065 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
32353066 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgcgcgtgcctggtat |
32353165 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
| |||||||||| ||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
32353166 |
ttatgagtgctccagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgatttcatctagtgtatgctacgaccatacaccac |
32353265 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | | | ||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32353266 |
ccataagggcttatggtaatcattaaaagtcttaacaacttatccatcaattttatattatttagcacatctcatccattatcatacactat |
32353357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 31207201 - 31207592
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||| ||||| |||||||||||| |||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
31207201 |
agatgtaatgcatcggaacggtatagaaagctatggaacccgtcctagactaatgaggcttaacacgcagtgaattggtttagcaagctatggaacccaa |
31207300 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||| ||||| | ||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||| ||| |
|
|
| T |
31207301 |
gacacttggtgtatactagaggtctcgcagtcacattacacccccacaattcttgctgttacgcggttgttcgctaataggccgtgcgcgtggctggtat |
31207400 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
31207401 |
tcatgagtgctctagagacccgccactgtctcatgcaagcggccccaattgacactcatataagtgattccatctagtgtatgctagaaccaaacaccac |
31207500 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31207501 |
ccataagggcttatggtaatcattaaaagcctttaaagcttatccctcaattttatattatttagcacatctcatccattatcatacactat |
31207592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 39426787 - 39427178
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||| |||| |||| |||||||||||| | || ||||||||||||||||||||| |||| |
|
|
| T |
39426787 |
agatgtaatgcatcagaacggtatagcaagctatggaacccgttctagattaataagacttaacacacaatgagttggtttagcaagctatggaacccaa |
39426886 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||||| ||| |
|
|
| T |
39426887 |
gacacttgttgtatgttagaagtcccacaatcacgttacacccccacaattcttgctgttacacggttgtgcggtaataggccgtgcgcgtgcctggtat |
39426986 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||| ||| |
|
|
| T |
39426987 |
tcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgtatgctacaatcaaacaccac |
39427086 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| || || ||| ||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39427087 |
ccataaaggcttatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcacatttcatccattatcatacactat |
39427178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 32354846 - 32354502
Alignment:
| Q |
19 |
atgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaaga |
118 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||| | |
|
|
| T |
32354846 |
atgtaatacatc-gaaccgtgtagcaagctatggaacccgtcctagactaatgagacttaacacacagtgaattggtttagcaagctatggaacccaata |
32354748 |
T |
|
| Q |
119 |
cacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctgatatt |
217 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||| ||||||||||||||| || ||| | || || ||||| ||||||||| | || ||| | || |
|
|
| T |
32354747 |
cacttgatgtatgctagaggtctcataatcacaatacacccccacaatt-ttcgtgtcatcgttgtgttgcgcatttaggccgtgcacatgtctggtttt |
32354649 |
T |
|
| Q |
218 |
catgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcacc |
316 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||| | | |
|
|
| T |
32354648 |
catgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgcatgctacaaccacacactaac |
32354549 |
T |
|
| Q |
317 |
cataagggcttatggtaatcattaaaagcctttaaagcatatccctca |
364 |
Q |
| |
|
| ||| || ||||||||||||||||| || || ||||| || |||||| |
|
|
| T |
32354548 |
c-taaaggattatggtaatcattaaaggcattaaaagcctaaccctca |
32354502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 13818368 - 13818281
Alignment:
| Q |
318 |
ataagggcttatggtaatcattaaaagcctttaaagcatatccctcatttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13818368 |
ataagggcttatggtaatcattaaaaacccttgaagcttaaccctcatttttattatttagcacatctcatccattatcatacactat |
13818281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 324
Target Start/End: Complemental strand, 2434304 - 2434135
Alignment:
| Q |
162 |
acaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctga--tatt-catgagtgctctagagacc--gcaacggtctcatgcaagc |
255 |
Q |
| |
|
||||||||||| ||| ||| ||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||| | | | |||||| || || |
|
|
| T |
2434304 |
acaattcttgtcgttggcgctgttgtgcgcgaataggccgtgcgcgtgcctggattatttcatgagtgctctagagattttgtcaagatctcatacaggc |
2434205 |
T |
|
| Q |
256 |
ggcctcacttgacactcatataggtgattccatctagtgtatgctac-gaccatacatcacccataaggg |
324 |
Q |
| |
|
|||| ||||||||||||| |||||||||| | || |||||||||| | | |||||| |||||||||||| |
|
|
| T |
2434204 |
ggccccacttgacactcacataggtgatttcttcaagtgtatgctgcaaatcatacaccacccataaggg |
2434135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 24042133 - 24042522
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatcc-a |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| || || ||||||||||||| |||||||| || |||||||||||||||||||||||| || | |
|
|
| T |
24042133 |
agatgtaatgcatcggaacggtgtagcaagctatggaacccatcctagactaatgagagttaacacacagtgaattggtttagcaagctatggaacccca |
24042232 |
T |
|
| Q |
116 |
agacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||| || |
|
|
| T |
24042233 |
agacacttgttgtatgcaagaggtctcacaatcacattacacccccataattcttgctgttacgcggttgtgcgctaataggctgtgcgcgtgcctggta |
24042332 |
T |
|
| Q |
216 |
ttcatgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatca |
314 |
Q |
| |
|
||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
24042333 |
ttcgtgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgtatgctacaaccatacacca |
24042432 |
T |
|
| Q |
315 |
cccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacac |
402 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24042433 |
cccataaaggcttatggtaatcattaaaagcctttaaagtttatccctcaattttatattatttagcacatctcatccattatcatacac |
24042522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 405
Target Start/End: Original strand, 6950309 - 6950696
Alignment:
| Q |
21 |
gtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaagaca |
120 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||| ||||| ||||||||| |||||||||||| || || ||| ||||||||||||||||| |||||||| |
|
|
| T |
6950309 |
gtaatgcatcggaacagtatagcaagctatggaacccgtcatagactaataagacttaacacacagtgagttgatttagcaagctatggaacccaagaca |
6950408 |
T |
|
| Q |
121 |
cttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatattcat |
220 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| | ||||||| ||||||| |
|
|
| T |
6950409 |
cttgttgtatgttagaggtctcacaatcacattacactcccacaattcttgctgttacgcggttgtgcgctaataggtcgtgcgtgtgcctggtattcat |
6950508 |
T |
|
| Q |
221 |
gagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcacccat |
319 |
Q |
| |
|
||||||||| |||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||| |
|
|
| T |
6950509 |
gagtgctctggagatccgccacggtctcatgcaagcagccccacttgacactcatataggtgattccatctagtgtatgctacaatcaaacaccacccat |
6950608 |
T |
|
| Q |
320 |
aagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| || || ||| | | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6950609 |
aaggacttatcataatcattaaaagcttttaaagcttacccatcaattatatattatttagcacatctcatccattatcatacactat |
6950696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 75 - 400
Target Start/End: Complemental strand, 19975662 - 19975336
Alignment:
| Q |
75 |
cttaacacatagagaattggtttagcaagctatggaatccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttg |
174 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| || |
|
|
| T |
19975662 |
cttaacacacggtgaattggtttagcaaactatggaccccaagacact-gttgtatgcaagaggtctcacaagcacatcacacccccacaattcttgctg |
19975564 |
T |
|
| Q |
175 |
ttacgcggttgtgcgctaataggccgtgagcgtgcctgatattcatgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactca |
273 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||| | |||||||||||||||||| | ||||||||||||| |
|
|
| T |
19975563 |
ttacgtggttgtgcgctaataggccgtgcacgtgtctggtattcatgagtgctctacagacccgtcacggtctcatgcaagcggtcgcacttgacactca |
19975464 |
T |
|
| Q |
274 |
tataggtgattccatctagtgtatgctacgaccatacatcacccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttat |
371 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||| ||||||||| ||| ||| |
|
|
| T |
19975463 |
tataggtgattccatctggtgtatgctactaccatacaccatccataagggcttatggtaatcattaaaag-ctctaaagcttatccctcaattttatat |
19975365 |
T |
|
| Q |
372 |
tatttagcacatctcatccattatcatac |
400 |
Q |
| |
|
|||||||||||| || ||||||||||||| |
|
|
| T |
19975364 |
tatttagcacatgtcttccattatcatac |
19975336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 34235020 - 34234737
Alignment:
| Q |
19 |
atgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaaga |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| ||||| ||||||| | | |||||||||| || |||| ||||||||||| ||||||| |||||| |
|
|
| T |
34235020 |
atgtaatgcatcagaacggtatagcaagttatggaacccgtcctagactagtaaaacttaacacacagtgaatcggtttagcaagttatggaacccaaga |
34234921 |
T |
|
| Q |
119 |
cacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatattc |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || | ||||||||||||| |
|
|
| T |
34234920 |
cacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgttacgcggtggtgcgctaataggccatgcgtgtgcctgatattc |
34234821 |
T |
|
| Q |
219 |
atgagtgctctagaga--ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgct |
300 |
Q |
| |
|
|||||||||||||||| || | | |||||||||||||||| |||||||| |||||||||| |||| |||| |||||||||| |
|
|
| T |
34234820 |
atgagtgctctagagattttgctaagatctcatgcaagcggccccacttgactctcatataggcgatttcatcaagtgtatgct |
34234737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 27077784 - 27077464
Alignment:
| Q |
20 |
tgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaagac |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||| || |||||||||||||||||||||||| |||| || |
|
|
| T |
27077784 |
tgtaatgcatcggaacggtgtagcaagctatggaacccgtcctagactaatgaggcttaacacacagtgaattggtttagcaagctatggaacccaatac |
27077685 |
T |
|
| Q |
120 |
acttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctgatattc |
218 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||| |||||||||||||| | ||| | ||| || ||||| ||||||||| ||||| ||||| ||| |
|
|
| T |
27077684 |
acttgatgtatgctagaggtctcacaatcgcatt--acccccacaattctcg-tgtaatcgctgtgttgcgcatttaggccgtgcgcgtgtctgattttc |
27077588 |
T |
|
| Q |
219 |
atgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcaccc |
317 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||| ||| ||||| |
|
|
| T |
27077587 |
atgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacacttatataggtgattccatctagtgcctgctacaaccacacaccaccc |
27077488 |
T |
|
| Q |
318 |
ataagggcttatggtaatcattaaa |
342 |
Q |
| |
|
||| ||||||||| |||||||||| |
|
|
| T |
27077487 |
-taaaggcttatggaaatcattaaa |
27077464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 298
Target Start/End: Complemental strand, 15516408 - 15516273
Alignment:
| Q |
164 |
aattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatattcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctca |
262 |
Q |
| |
|
|||| ||| ||||||||| |||||||| |||||||| | ||||| ||| | ||||||||||||||||||| |||| ||||||||||||||||||| || |
|
|
| T |
15516408 |
aattgttgctgttacgcgattgtgcgcgaataggccaagcgcgtgtctggtcttcatgagtgctctagagacccgccacggtctcatgcaagcggctcca |
15516309 |
T |
|
| Q |
263 |
cttgacactcatataggtgattccatctagtgtatg |
298 |
Q |
| |
|
|||||||| |||||||| ||| |||| |||||||| |
|
|
| T |
15516308 |
cttgacacccatataggcaatttcatcaagtgtatg |
15516273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 14922807 - 14922656
Alignment:
| Q |
154 |
acacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctgata--ttcatgagtgctctagagacc--gcaacggtctca |
248 |
Q |
| |
|
||||||||||||||||||| ||| |||||| |||| ||||||||||||| |||||||| || ||||||||||||||||||| || | | ||||| |
|
|
| T |
14922807 |
acacccccacaattcttgtcattaacgcggtggtgcactaataggccgtgcgcgtgccttattatttcatgagtgctctagagattttgccaagatctca |
14922708 |
T |
|
| Q |
249 |
tgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgct |
300 |
Q |
| |
|
| ||||||||| ||||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
14922707 |
tacaagcggccccacttgacactcacataggtgatttcatcaagtgtatgct |
14922656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 282
Target Start/End: Original strand, 34096713 - 34096846
Alignment:
| Q |
155 |
cacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctg---atattcatgagtgctctagagac--cgcaacggtctca |
248 |
Q |
| |
|
|||||||||||||||||| ||| ||| || |||||| ||||||||||| |||||| || || ||||||||||||||||||| ||| | ||||| |
|
|
| T |
34096713 |
cacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttggatattttcatgagtgctctagagatttcgccaatatctca |
34096812 |
T |
|
| Q |
249 |
tgcaagcggcctcacttgacactcatataggtga |
282 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |
|
|
| T |
34096813 |
tgcaagcggccccacttgacactcacataggtga |
34096846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 43291563 - 43291173
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
43291563 |
agatgtaatgcatcggaacggtgtagcaagctatgaaacccgtcctacactaatgagacttaacacacagtgaattggtttagcaagctatggaacccaa |
43291464 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |
|
|
| T |
43291463 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgccctaataggccgtgcgcgtgcctggtat |
43291364 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43291363 |
tcatgagtgctctagagacccgccacggtctcatacaagcggccccacttgacactcatataggtgattccatctagtgtatgctacgaccatacaccac |
43291264 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacacta |
404 |
Q |
| |
|
| |||||||||||||||||||||||||| ||| | | | ||||| ||| ||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43291263 |
ctataagggcttatggtaatcattaaaaatcttaacaacttatccatcaattttatattatttaacacatctcatccattatcatacacta |
43291173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 6668411 - 6668740
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
6668411 |
agatgtaatgcatcggaacggtgtagcaagctatggaatccgtcctagactaatgaggcttaacacacagtgaattggtttagcaagctatggaacccaa |
6668510 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||| ||| |
|
|
| T |
6668511 |
gacacttggtgtatgctagaggtctcacagtcacattacacccccacaattcttgctgttacgcggttgtccgctaataggccttgcgcgtgcctggtat |
6668610 |
T |
|
| Q |
217 |
tcatgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| |
|
|
| T |
6668611 |
tcatgagtgctctagagacctgccacggtctcatacaagcggccccacttgacactcatataggtgattccatctagcgtatgctactaccatacaccac |
6668710 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6668711 |
ccataagggcttatggtaatcattaaaagc |
6668740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 118 - 342
Target Start/End: Original strand, 8989688 - 8989912
Alignment:
| Q |
118 |
acacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||||||||||||||||| || || | || || ||||| |||||| || ||||| ||| | | |
|
|
| T |
8989688 |
acacttgatgtatgctagaggtctcataatcacattacacccccacaattctcgt-gtcatcgttgtgttgcgcatttaggccatgcgcgtgtctggttt |
8989786 |
T |
|
| Q |
217 |
tcatgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | || ||| ||| |
|
|
| T |
8989787 |
tcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgcatgctacaatcacacaccac |
8989886 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaa |
342 |
Q |
| |
|
|| ||| |||||||||||||||||||| |
|
|
| T |
8989887 |
cc-taaaggcttatggtaatcattaaa |
8989912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 198 - 364
Target Start/End: Complemental strand, 6806113 - 6805947
Alignment:
| Q |
198 |
ccgtgagcgtgcctgatattcatgagtgctctagagaccg-caacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgta |
296 |
Q |
| |
|
||||| ||||| ||| | ||||||||||||||||||||| | |||||| ||||||||||| | |||||||||||||||||||||||||||||||||| | |
|
|
| T |
6806113 |
ccgtgcgcgtgtctggttttcatgagtgctctagagacccaccacggtcccatgcaagcggtcccacttgacactcatataggtgattccatctagtgca |
6806014 |
T |
|
| Q |
297 |
tgctacgaccatacatcacccataagggcttatggtaatcattaaaagcctttaaagcatatccctca |
364 |
Q |
| |
|
|||||| |||| ||| ||||| ||| |||||||||||||||||||| || || ||||| || |||||| |
|
|
| T |
6806013 |
tgctacaaccacacaccaccc-taaaggcttatggtaatcattaaaggcattaaaagcctaaccctca |
6805947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 6685477 - 6685396
Alignment:
| Q |
244 |
tctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctac-gaccatacatcacccataaggg |
324 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| |||||||||| |||| |||||||||| | | |||||| |||||||||||| |
|
|
| T |
6685477 |
tctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgtatgctgcaaatcatacaccacccataaggg |
6685396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 294
Target Start/End: Original strand, 6661032 - 6661178
Alignment:
| Q |
154 |
acacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctg---atattcatgagtgctctagagac--cgcaacggtctc |
247 |
Q |
| |
|
||||||||||| ||||||| ||| ||| || |||||| |||||||| || ||||||||| || ||||||||||||| ||||| ||| | |||| |
|
|
| T |
6661032 |
acacccccacatttcttgtcgttggcgctgtggtgcgcgaataggccatgcgcgtgcctggaaattttcatgagtgctccagagatttcgccgagatctc |
6661131 |
T |
|
| Q |
248 |
atgcaagcggcctcacttgacactcatataggtgattccatctagtg |
294 |
Q |
| |
|
|| ||||||||| ||||||||||||| |||||||||| |||| |||| |
|
|
| T |
6661132 |
atacaagcggccccacttgacactcacataggtgatttcatcaagtg |
6661178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 572521 - 572573
Alignment:
| Q |
246 |
tcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatg |
298 |
Q |
| |
|
|||| ||||||||| ||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
572521 |
tcatacaagcggccccacttgacactcacataggtgatttcatcaagtgtatg |
572573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 6806188 - 6806154
Alignment:
| Q |
20 |
tgtaatgcatcagaacggtgtagcaagctatggaa |
54 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6806188 |
tgtaatgcatcggaacggtgtagcaagctatggaa |
6806154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 14657601 - 14657210
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||| | |||||||| || |||| |
|
|
| T |
14657601 |
agatgtaatgcatcggaacggtgtagcaagctatcgaacccgtcctagactaatgagacttaacacatagtgaattggtttgggaagctatgaaacccaa |
14657502 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
14657501 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattctagctattatgcggttgtgcgctaatagaccgtgcgcgtgcctggtat |
14657402 |
T |
|
| Q |
217 |
tcatgagtgctctaga-gaccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14657401 |
tcatgagtgctctagaggcccgccacggtctcatgcaagcggcctcacttcacactcatatagctgattccatctagtgtatgctacgaccatacaccac |
14657302 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| | | ||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14657301 |
ccataagggcttatggtaatcattaaaagtccttacaacttatccatcaattttatattatttagcacatctcatccattatcatacactat |
14657210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 19930727 - 19931118
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| |||| || |||||||||||||||||||||||| ||| |
|
|
| T |
19930727 |
agatgtaatgcatcggaacggtgtagcaagctatggaatctgtcctagactaatgagacttagcacacagtgaattggtttagcaagctatggaactcaa |
19930826 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||| |
|
|
| T |
19930827 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacacagttgtgcgctaataggccgtacgcgtgcctggtat |
19930926 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||| | || | ||||| |||||||||| ||| ||||||||||| |||||||||||| | ||||||||||||||| |||| ||| ||| |
|
|
| T |
19930927 |
tcatgagtgctctagaaacccaccacggtttcatgcaagctgccccacttgacacttatataggtgatttcgtctagtgtatgctacaaccaaacaccac |
19931026 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19931027 |
ccataagggcttatggtattcattaaaagtatttaaagcttatccctcaattttatattatttagcacatctcatccattatcatacactat |
19931118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 53727343 - 53727698
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||| | ||| ||||||||| |||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
53727343 |
agatgtaatgcatcggaacagtatagcaagctatggaacctgtcctagactaataagacttaacacacagtgaattggtttagcaagctatggaatccaa |
53727442 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||||||||||| |||||| | | |||||| |||||||||||||||||| || ||||||||| ||| |
|
|
| T |
53727443 |
gacacttgttatgtgttagaggtctcacaatcacattacacccccagaattctagctattacgccgttgtgcgctaataggccatgcgcgtgcctggtat |
53727542 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| | |||| ||| ||| |
|
|
| T |
53727543 |
tcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatccagtgcatgctccaaccacacaccac |
53727642 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctcatttttat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| || || ||| |||||| |
|
|
| T |
53727643 |
ccataagggcttatggtaatcattaaaagccgtttaagcttacccatcaattttat |
53727698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 42254257 - 42254581
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||| |||| |
|
|
| T |
42254257 |
agatgtaatgcatcggaacggtgtagcaagctatggaa---------gactaatgagacttagcacggagtgaattggtttagcaagctatggaacccaa |
42254347 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||| ||||| ||| ||| |
|
|
| T |
42254348 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgatgttatgtggttgtacgctaataggccgtgcgcgtgtctggtat |
42254447 |
T |
|
| Q |
217 |
tcatgagtgctctagagaccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcacc |
316 |
Q |
| |
|
|||||| ||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||| | | |
|
|
| T |
42254448 |
tcatgaatgctctagaacccgtcacggtctcatgcaagcggccccagttgacactcatataggtgattccatctagtgtatgctacaaccaaacacctac |
42254547 |
T |
|
| Q |
317 |
cataagggcttatggtaatcattaaaagccttta |
350 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
42254548 |
cataagggcttatagtaatcattaaaagccttta |
42254581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 32895648 - 32895329
Alignment:
| Q |
20 |
tgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaagac |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| || |
|
|
| T |
32895648 |
tgtaatgcatcggaacggtgtagcaagctatggaacccgtcctagactaataagacttaacacatagtgaattggtttagcaagctatggaacccaatac |
32895549 |
T |
|
| Q |
120 |
acttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctgatattc |
218 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||| |||||||||||||| | ||| | ||| || ||||| ||||||||| ||||| ||| | ||| |
|
|
| T |
32895548 |
acttggtgtatgctagaggtctca-aatcacatt--acccccacaattctcg-tgtaatcgctgtgttgcgcatttaggccgtgcgcgtgtctggttttc |
32895453 |
T |
|
| Q |
219 |
atgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcaccc |
317 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| |
|
|
| T |
32895452 |
atgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgcatgctacaaccacacaccaccc |
32895353 |
T |
|
| Q |
318 |
ataagggcttatggtaatcattaaa |
342 |
Q |
| |
|
||| ||||||||| |||||||||| |
|
|
| T |
32895352 |
-taaaggcttatggaaatcattaaa |
32895329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 16357032 - 16357243
Alignment:
| Q |
23 |
aatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaagacact |
122 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||| |||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||| |
|
|
| T |
16357032 |
aatgcatcggaacggtatagcaagctatggaacccgtcctagactaatgaggcttaacacacactgaattggtttagcaagctatggaacccaagacact |
16357131 |
T |
|
| Q |
123 |
tgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatattcatga |
222 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
16357132 |
tggtgtatgctagaggtctcacaatcacattacaccctcacaattcttgttgttacgcggttgtgcgctaataggccgtgtgcgggcctagtattcatga |
16357231 |
T |
|
| Q |
223 |
gtgctctagaga |
234 |
Q |
| |
|
||||||||||| |
|
|
| T |
16357232 |
ctgctctagaga |
16357243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 11634789 - 11635005
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||| ||||| ||||||||| |||||||| ||| | |||||||||||||||||||||||| ||| |
|
|
| T |
11634789 |
agatgtaatgcatcagaatggtatatcaagctatggaacccgtcctagactaataagacttaagacacggtgaattggtttagcaagctatggaaccca- |
11634887 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||| |||||| ||| ||||| |||||||||| ||||||||||| ||||||||||||||| | |||||||| ||||||| | || ||||||||||||| |
|
|
| T |
11634888 |
gacaattgttgcatgttagaggcctcacaatcatattacacccccctaattcttgttgttacacagttgtgcgttaataggtcatgcgcgtgcctgatat |
11634987 |
T |
|
| Q |
217 |
tcatgagtgctctagaga |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11634988 |
tcatgagtgctctagaga |
11635005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 16363776 - 16363850
Alignment:
| Q |
251 |
caagcggcctcacttgacactcatataggtgattccatctagtgtatgctacga-ccatacatcacccataaggg |
324 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| |||| |||||||||| | | |||||| |||||||||||| |
|
|
| T |
16363776 |
caagcggccccacttgacactcatataggcgatttcatcaagtgtatgctgcaagtcatacaccacccataaggg |
16363850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 127266 - 126886
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
127266 |
agatgtaatgcatcggaacggtttagcaagctatgtaacttgtcctagactaatgagacttaacacatagtgaattggtttagcaagctatggaacccaa |
127167 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || || ||||||||| ||| |
|
|
| T |
127166 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgt-----------gcgctaatagaccatgcgcgtgcctggtat |
127078 |
T |
|
| Q |
217 |
tcatgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
127077 |
tcttgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgtatgctacgaccatacaccac |
126978 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctc--atttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| | | | ||||| || |||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
126977 |
ccataagagcttatggtaatcattaaaagtcttaacaacttatccatcaaatttatattatttaccacatctcatccattatcatacactat |
126886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 10938606 - 10938996
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||| || | | |||||||||||||||||||||||| |||| |
|
|
| T |
10938606 |
agatgtaatgcatcggaacggtgtatcaagctatggaacccgtcctagactaatgagacttagcatacaatgaattggtttagcaagctatggaacccaa |
10938705 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||||| | ||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||| || ||||||||| ||| |
|
|
| T |
10938706 |
gacacttgttatgtgctagagatctcacaatcacactacacccccacaattcttgctgttacgcggttgtgcacgaataggccatgcgcgtgcctggtat |
10938805 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| | || ||| ||| |
|
|
| T |
10938806 |
tcatgagtgctctagagacccgccacggtctcatacaagcggccccacttgaaactcatataggtgattccatctagtgtatgctacaatcaaacaccac |
10938905 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| | || || ||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10938906 |
caataagggcttatggtaatcattaaaagcttttaaa-cttacccatcaattttatattatttagcacatctcatccattatcatacactat |
10938996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 10944468 - 10944858
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||| || | | |||||||||||||||||||||||| |||| |
|
|
| T |
10944468 |
agatgtaatgcatcggaacggtgtatcaagctatggaacccgtcctagactaatgagacttagcatacaatgaattggtttagcaagctatggaacccaa |
10944567 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||||| | ||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||| || ||||||||| ||| |
|
|
| T |
10944568 |
gacacttgttatgtgctagagatctcacaatcacactacacccccacaattcttgctgttacgcggttgtgcacgaataggccatgcgcgtgcctggtat |
10944667 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| | || ||| ||| |
|
|
| T |
10944668 |
tcatgagtgctctagagacccgccacggtctcatacaagcggccccacttgaaactcatataggtgattccatctagtgtatgctacaatcaaacaccac |
10944767 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| | || || ||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10944768 |
caataagggcttatggtaatcattaaaagcttttaaa-cttacccatcaattttatattatttagcacatctcatccattatcatacactat |
10944858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 26969524 - 26969852
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||| || | ||||||||||||| |||||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
26969524 |
agatgtaatgcatcggaatagtatagcaagctattaaacctgtcttagactaataagacttaacacacagtgaattggtttagcaagctatggaacccaa |
26969623 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
|||||||||| | || |||||||||||||| ||||||||||||| ||| ||| | |||||||| |||||||||||||||||| || ||||| ||| ||| |
|
|
| T |
26969624 |
gacacttgttatgtgttagaggtctcacaatgacattacacccccgcaaatctagctgttacgccgttgtgcgctaataggccatgcgcgtgtctggtat |
26969723 |
T |
|
| Q |
217 |
tcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcac |
315 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| | |||| ||| ||| |
|
|
| T |
26969724 |
tcatgaatgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatatagatgattccatctagtgcatgctccaaccacacaccac |
26969823 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaaag |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26969824 |
ccataagggcttatggtaatcattaaaag |
26969852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 14631944 - 14632083
Alignment:
| Q |
33 |
aacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaagacacttgttgtatgc |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| | || |||| ||||||| ||||||| |
|
|
| T |
14631944 |
aacggtgtagcaagctatggaatccgtcttagactaatgaaacttaacgcacgttgaattggtttagcaagctaagaaacccaatacacttgatgtatgc |
14632043 |
T |
|
| Q |
133 |
aagaggtctcacaatcacattacacccccacaattcttgt |
172 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
14632044 |
tagaggtctcataatcaaattacacccccgtaattcttgt |
14632083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 405
Target Start/End: Original strand, 68912 - 68988
Alignment:
| Q |
331 |
gtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
68912 |
gtaatcattaaaagcctttaaagcttatccctcaattttatattatttagcacatctcatcctatatcatacactat |
68988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 9810435 - 9810543
Alignment:
| Q |
263 |
cttgacactcatataggtgattccatctagtgtatgctacgaccatacatcacccataagggcttatggtaatcattaaaagcctttaaagcatatccct |
362 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||||| | |||| ||| |||||| ||||||||||||||||||||| ||||||| ||||||| | |
|
|
| T |
9810435 |
cttgacacttatatatatgatttcatctagtgtatgctacaatcatatgccactcataagagcttatggtaatcattaaaagtctttaaaacatatcctt |
9810534 |
T |
|
| Q |
363 |
catttttat |
371 |
Q |
| |
|
|| |||||| |
|
|
| T |
9810535 |
caattttat |
9810543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 324
Target Start/End: Complemental strand, 19436449 - 19436273
Alignment:
| Q |
154 |
acacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctgat--attcatgagtgctctagagac--cgcaacggtctca |
248 |
Q |
| |
|
||||||||||||||||| ||||| ||| || |||||||||||||| ||| ||| |||| | |||||||||||||| ||| | ||| | | ||||| |
|
|
| T |
19436449 |
acacccccacaattcttactgttaacgctgtggtgcgctaataggctgtgctcgtacctggttaattcatgagtgctccagatatttcgccaagatctca |
19436350 |
T |
|
| Q |
249 |
tgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgct-acgaccatacatcacccataaggg |
324 |
Q |
| |
|
| ||| ||| | ||||||||||||| |||||||||| |||| |||||||||| | | |||||| |||||||||||| |
|
|
| T |
19436349 |
tacaaacgggcccacttgacactcacataggtgatttcatcaagtgtatgctgaaaatcatacaccacccataaggg |
19436273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 16085802 - 16086194
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||| | ||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
16085802 |
agatgtaatgcatcggaacagtatagcaagctatggaacctgtcctagactaataagacttaacacatagtgaattggtttagcaagctatggaacccaa |
16085901 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgcta-ataggccgtgagcgtgcctgata |
215 |
Q |
| |
|
|||||||| | |||| |||||||||||| ||||||||||||| |||||||| || |||||||| ||||||||||| |||||| || || ||||||||| |
|
|
| T |
16085902 |
gacacttgctatatgttagaggtctcacagtcacattacacccacacaattcatgctgttacgccgttgtgcgctatttaggccatgcgcatgcctgata |
16086001 |
T |
|
| Q |
216 |
ttcatgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatca |
314 |
Q |
| |
|
||||||||||||||| ||| |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||| || |
|
|
| T |
16086002 |
ttcatgagtgctctaaagacccgccacagtctcatacaagcggcctcacttgacactcatataggtgattccatctagtgcatgctccaaccacacacca |
16086101 |
T |
|
| Q |
315 |
cccataagggcttatggtaatcattaaaagcctttaaagcatatccctca--tttttattatttagcacatctcatccattatcatacactat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| || || ||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16086102 |
cccataagggcttatggtaatcattaaaagcattttaagcttacccatcaattttatattatttagcacatctcatccattatcatacactat |
16086194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 26052881 - 26052561
Alignment:
| Q |
20 |
tgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaagac |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||| || |||||||||||||||||||||||| |||| || |
|
|
| T |
26052881 |
tgtaatgcatcggaacggtgtagcaagctatggaacccgtcctagactaatgaggcttaacacacagtgaattggtttagcaagctatggaacccaatac |
26052782 |
T |
|
| Q |
120 |
acttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctgatattc |
218 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |||||||||||||| | ||| | ||| || ||||| ||||||||| ||||| ||| | ||| |
|
|
| T |
26052781 |
acttgatgtatgctagaggtctcacaatcacatt--acccccacaattctcg-tgtaatcgctgtgttgcgcatttaggccgtgcgcgtgtctggttttc |
26052685 |
T |
|
| Q |
219 |
atgagtgctctagaga-ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcaccc |
317 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| |
|
|
| T |
26052684 |
atgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgcatgctacaaccacacaacaccc |
26052585 |
T |
|
| Q |
318 |
ataagggcttatggtaatcattaaa |
342 |
Q |
| |
|
||| ||||||||| |||||||||| |
|
|
| T |
26052584 |
-taaaggcttatggaaatcattaaa |
26052561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 26707966 - 26708011
Alignment:
| Q |
154 |
acacccccacaattcttgttgttacgcggttgtgcgctaataggcc |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26707966 |
acacccccacaattcttgttgctacgcggttgtgcgctaataggcc |
26708011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 26977700 - 26977745
Alignment:
| Q |
154 |
acacccccacaattcttgttgttacgcggttgtgcgctaataggcc |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26977700 |
acacccccacaattcttgttgctacgcggttgtgcgctaataggcc |
26977745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 31183353 - 31183043
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||| ||||||||||||||| | |||||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
31183353 |
agatgtaaggcatcagaacggtataccaagctatggaacccgtcttagactaataaaacttaacacacggtgaattggtttagcaagctatggaacccaa |
31183254 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||||||| ||| |
|
|
| T |
31183253 |
gacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgttacgcggttgtgcgcgaataggccatgcgcgtgcctggtat |
31183154 |
T |
|
| Q |
217 |
tcatgagtgctctagaga--ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacga-ccatacatc |
313 |
Q |
| |
|
|||||||||||||||||| || | | |||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||| | | |||||| | |
|
|
| T |
31183153 |
tcatgagtgctctagagattttgccaagatctcatgcaagcggccccacttgacactcatataggcgatttcatcaagtgtatgctgcaagtcatacacc |
31183054 |
T |
|
| Q |
314 |
acccataaggg |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
31183053 |
acccataaggg |
31183043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 38678179 - 38677873
Alignment:
| Q |
18 |
gatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaag |
117 |
Q |
| |
|
||||||||||||| ||||||| || |||||||| || ||| ||||||||| |||||||||||| || |||||| ||||||||||||||||| ||||| |
|
|
| T |
38678179 |
gatgtaatgcatcggaacggtataagaagctatgaaacatgtcctagactaataagacttaacacacagtgaattgatttagcaagctatggaa-ccaag |
38678081 |
T |
|
| Q |
118 |
acacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatatt |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||||| || |||| |
|
|
| T |
38678080 |
acacttgttgtatgttagaggtctcacaatcacattacacccc-acaattcttgctgttacgcggttgtgcgttaataggccgtgcgcgtgcttggtatt |
38677982 |
T |
|
| Q |
218 |
catgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgac-catacatcac |
315 |
Q |
| |
|
| ||||||||||||||||| || |||||||||||||||||||| |||| ||||| |||||||| |||| |||| ||||||| || | || |||||| ||| |
|
|
| T |
38677981 |
cgtgagtgctctagagacctgccacggtctcatgcaagcggccccactcgacacccatataggcgatttcatcaagtgtatactgcaactcatacaccac |
38677882 |
T |
|
| Q |
316 |
ccataaggg |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
38677881 |
ccataaggg |
38677873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 307
Target Start/End: Original strand, 38641389 - 38641667
Alignment:
| Q |
23 |
aatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaagacact |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||| |||| | ||| |
|
|
| T |
38641389 |
aatgcatcggaacggtgtagcaagctatggaacccgtcctagactaatgagacttaat-------gaattggtttagcaagttatggaacccaatatact |
38641481 |
T |
|
| Q |
123 |
tgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttac-gcggttgtgcgctaataggccgtgagcgtgcctgatattcatg |
221 |
Q |
| |
|
|| ||||||| |||||||||| ||||||||||||||||||||||||| || || | || || ||||| ||||||||| ||||| ||| | |||||| |
|
|
| T |
38641482 |
tgatgtatgctagaggtctcataatcacattacacccccacaattctcgt-gtaatagctgtgttgcgcatttaggccgtgcgcgtgtctggttttcatg |
38641580 |
T |
|
| Q |
222 |
agtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgacca |
307 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
38641581 |
agtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatccggtgcatgctacaacca |
38641667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 43657363 - 43657249
Alignment:
| Q |
48 |
tatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaagacacttgttgtatgcaagaggtctcacaat |
147 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||||||| ||||||||||| ||||| |||||| ||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
43657363 |
tatggaacccgtcctagactaataagacttaacacatagtgaattggtttaacaagccatggaactcaatacacttgatgtatgctagaggtctcacaat |
43657264 |
T |
|
| Q |
148 |
cacattacaccccca |
162 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43657263 |
cacattacaccccca |
43657249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 364
Target Start/End: Complemental strand, 43657200 - 43657077
Alignment:
| Q |
240 |
acggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacatcacccataagggcttatggtaatcatt |
339 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||| |||| ||| ||||| ||| |||||||| |||||||| |
|
|
| T |
43657200 |
acggtctcatgcaagcggccccacttgacactcatataggtgattccatctggagcatgctacaaccacacaccaccc-taaaggcttatgctaatcatt |
43657102 |
T |
|
| Q |
340 |
aaaagcctttaaagcatatccctca |
364 |
Q |
| |
|
||| || || ||||| || |||||| |
|
|
| T |
43657101 |
aaaggcattaaaagcctaaccctca |
43657077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 44316336 - 44316186
Alignment:
| Q |
155 |
cacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctga--tattcatgagtgctctagagac--cgcaacggtctcat |
249 |
Q |
| |
|
|||||||||||||||||| ||| ||| || |||||| ||||||||||| |||||| || | ||||||||||||||||||| ||| | |||||| |
|
|
| T |
44316336 |
cacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttggatttttcatgagtgctctagagatttcgccaatatctcat |
44316237 |
T |
|
| Q |
250 |
gcaagcggcctcacttgacactcatataggtgattccatctagtgtatgct |
300 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
44316236 |
gcaagcggccccacttgacactcacataggtgatttcatcaagtgtatgct |
44316186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 29278527 - 29278375
Alignment:
| Q |
154 |
acacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctga--tatt-catgagtgctctagagac--cgcaacggtctc |
247 |
Q |
| |
|
||||||||||||||||||| ||| ||| || ||| |||||||||||||| ||||||||| |||| ||||||||| ||||||| ||| | | || | |
|
|
| T |
29278527 |
acacccccacaattcttgtcgttggcgctgtggtgtgctaataggccgtgcgcgtgcctggattatttcatgagtgcactagagatttcgccaagatccc |
29278428 |
T |
|
| Q |
248 |
atgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgct |
300 |
Q |
| |
|
|| ||||||||| ||||||||||||| ||||| |||| |||| |||||||||| |
|
|
| T |
29278427 |
atacaagcggccccacttgacactcacataggagatttcatcaagtgtatgct |
29278375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 86561 - 86276
Alignment:
| Q |
17 |
agatgtaatgcatcagaacggtgtagcaagctatggaatccgtcttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaa |
116 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||| |||| ||||| ||||||||| |||||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
86561 |
agatgtaatgcattggaaaggtatagcaagctagggaacccgtcctagactaataagacttaacacacagtgaattggtttagcaagctatggaacccaa |
86462 |
T |
|
| Q |
117 |
gacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgagcgtgcctgatat |
216 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| || ||||| ||| ||| |
|
|
| T |
86461 |
gacacttgttgtatgttagaggtctcgtaatcacattacacctccacaattcttgttgttacacggttgtgcgctaatacgccatgcgcgtgtctggtat |
86362 |
T |
|
| Q |
217 |
tcatgagtgctctagaga--ccgcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgct |
300 |
Q |
| |
|
||||||||| |||||||| || | | |||||||||||||||| ||||||||||||||||||| |||| |||| ||| |||||| |
|
|
| T |
86361 |
tcatgagtgttctagagattttgccaagatctcatgcaagcggccccacttgacactcatataggcgatttcatcaagtctatgct |
86276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 201999 - 201675
Alignment:
| Q |
20 |
tgtaatgcatcagaacggtgtagcaagctatggaatccgtc-ttagactaatgagacttaacacatagagaattggtttagcaagctatggaatccaaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||||| || |||| | |
|
|
| T |
201999 |
tgtaatgcatcagaacggtgtagcaagctatggaacccgtcattagactaatgagtcttaacacacactgaattggtttagcaagctatgaaacccaata |
201900 |
T |
|
| Q |
119 |
cacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctgatatt |
217 |
Q |
| |
|
|||||| ||||| | |||||||||| ||||||||||||||||||||||||| | ||| | ||| || ||||| ||||||||| || ||| | || |
|
|
| T |
201899 |
cacttgatgtatcctagaggtctcaaaatcacattacacccccacaattctcg-tgtaatcgctgtgttgcgcatttaggccgtgcatatgtctggtttt |
201801 |
T |
|
| Q |
218 |
catgagtgctctagagacc-gcaacggtctcatgcaagcggcctcacttgacactcatataggtgattccatctagtgtatgctacgaccatacat-cac |
315 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| |||| || | ||| |
|
|
| T |
201800 |
catgagtgctctagagacctaccacggtctcatgcaagcggccccacttaacactcatataggtgattccatctagtggatgctacaaccacacttccac |
201701 |
T |
|
| Q |
316 |
ccataagggcttatggtaatcattaaa |
342 |
Q |
| |
|
|| ||| ||||||||||||||||||| |
|
|
| T |
201700 |
ccttaa-tgcttatggtaatcattaaa |
201675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 324
Target Start/End: Original strand, 37953 - 38210
Alignment:
| Q |
74 |
acttaacacatagagaatt-ggtttagcaagctatg-gaatccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttg |
171 |
Q |
| |
|
|||||||||| || ||||| ||| ||||||||||| ||| | ||||||||||| ||||| |||||||| || | ||| |||||||||||||||||| |
|
|
| T |
37953 |
acttaacacacagtgaatttggtgtagcaagctatatgaaccaaagacacttgt-gtatgttagaggtctatcacccgcatcacacccccacaattcttg |
38051 |
T |
|
| Q |
172 |
ttgtta-cgcggttgtgcgctaataggccgtgagcgtgcctga--tattcatgagtgctctagagac--cgcaacggtctcatgcaagcggcctcacttg |
266 |
Q |
| |
|
| ||| ||| || |||||| ||||||||||| |||||| || | ||||||||||||||||||| ||| | |||||||||||||||| |||||| |
|
|
| T |
38052 |
tcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttggatttttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttg |
38151 |
T |
|
| Q |
267 |
acactcatataggtgattccatctagtgtatgctac-gaccatacatcacccataaggg |
324 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||| | | |||||| |||||||||||| |
|
|
| T |
38152 |
acactcacataggtgattttatcaagtgtatgctgcaaatcatacaccacccataaggg |
38210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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