View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3612_high_1 (Length: 631)
Name: NF3612_high_1
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3612_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 334 - 615
Target Start/End: Original strand, 4570350 - 4570630
Alignment:
| Q |
334 |
ccatttgctcttatacattcaaaaatgacatttttaccctcaacagaagttaactactgtttgctggtctactgtagttaactgttgttccagatccaaa |
433 |
Q |
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| T |
4570350 |
ccatttgctcttatacattcaaaaatgacatttttaccctctacagaagttaactactgtttcccggtctacggtagttaactatcgtttcagatccaaa |
4570449 |
T |
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| Q |
434 |
cctaaatataccagggnnnnnnnctcatgttgtagttaagtaccgtacaaatttcttattgtcttaatttctggtcccaacagtgagatcgtgggaatga |
533 |
Q |
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| T |
4570450 |
cctaaatatactagg-aaaaaaactcatgccgtagttaagtaccgtacaaatttcttactgtcttaatttctggtcccaacagtgagatcgtgggaatga |
4570548 |
T |
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| Q |
534 |
attttgttttcagcaactactaaatatggagaaattttagttgatatttcagttctggttcagtagttgtaacagttaaaat |
615 |
Q |
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| T |
4570549 |
attttgttttcaacaactactaaacatggagaaattttagttgaaatttcagttctggttcagtagttgtaactgttaaaat |
4570630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 28 - 274
Target Start/End: Original strand, 4570101 - 4570346
Alignment:
| Q |
28 |
cataggtgatggtgcatctattccggtttggtataacaaatggatttcaaatgatgtctctctttattcnnnnnnnnnn------tgatgtctctcttat |
121 |
Q |
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| T |
4570101 |
cataggtgatgatgcatctattccagtttggtataacaaatggattttaaatgatgtctctctttattaaaaataaaataaaaaatgatgtctctcttat |
4570200 |
T |
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| Q |
122 |
tccacggtacgatggtgaattcgatatagctgaccttcaagtatcaatatgatgatccaacctttaagtacgaataagttgacattcaatatcttaaggt |
221 |
Q |
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| T |
4570201 |
tccacggtacaatggtgaattc-------------ttcaagtatcaatatgatgatccaacctttaagtacgaataagttgacgttcaatatcttaaggt |
4570287 |
T |
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| Q |
222 |
tttgggtgaatctgagatgtccaatctc------gtagttggtcttattccaatatgat |
274 |
Q |
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| T |
4570288 |
tttgggtgaatctgagatgtccaatctcactagtgtaattggtcttattccaatatgat |
4570346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 8782467 - 8782500
Alignment:
| Q |
51 |
cggtttggtataacaaatggatttcaaatgatgt |
84 |
Q |
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| T |
8782467 |
cggtttggtataacaaatggattgcaaatgatgt |
8782500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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