View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3612_high_13 (Length: 256)
Name: NF3612_high_13
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3612_high_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 10296375 - 10296128
Alignment:
| Q |
9 |
agcacagacatagaactgaataaccagaaaataattaaatgagaaaacagtaaccaaatgtagttttcttatgcgaagaggtaaacatacaaggtttatc |
108 |
Q |
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| T |
10296375 |
agcacagacatagaactgaataacaagaaaataattaaatgagaaaacagtaaccaaatgtagttttcttatgcgaagaggtaaacatacaaggtttatc |
10296276 |
T |
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| Q |
109 |
caacttacagtatttcctgaagatgctaagaagtagtgatcaagataaggacagatagcaagtggaattccattccatatagttgcacaaaccactcaga |
208 |
Q |
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| T |
10296275 |
caacttacagtatttcctgaagatgctaagaagtagtgatcaagataaggacagatagcaagtggaattccattccatatagttgcacaaaccactcaga |
10296176 |
T |
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| Q |
209 |
actgccacgtttcatttttattaccaagtttgatgccatccaaactat |
256 |
Q |
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| T |
10296175 |
actgccacgtttcatttttattaccaagtttgatgccatccaaactat |
10296128 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 248
Target Start/End: Original strand, 43795595 - 43795711
Alignment:
| Q |
129 |
agatgctaagaagtagtgatcaagataaggacagatagcaagtggaattccattccatatagttgcacaaaccactcagaactgccacgtttcattttta |
228 |
Q |
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| T |
43795595 |
agatgccaaaaaatagcgatcaagataaggacagatcgcttgtacaattccctgccatgtagttgcagaagccaatcggaactgccaaatttcattttca |
43795694 |
T |
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| Q |
229 |
ttaccaagtttgatgccatc |
248 |
Q |
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| T |
43795695 |
t---caagtttgatgccatc |
43795711 |
T |
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