View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3612_high_15 (Length: 253)

Name: NF3612_high_15
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3612_high_15
NF3612_high_15
[»] chr5 (4 HSPs)
chr5 (18-149)||(26440002-26440132)
chr5 (102-149)||(26296450-26296497)
chr5 (214-253)||(26440197-26440236)
chr5 (99-149)||(14148336-14148386)
[»] chr3 (2 HSPs)
chr3 (102-149)||(50662494-50662541)
chr3 (105-149)||(40892798-40892842)
[»] chr8 (2 HSPs)
chr8 (102-149)||(26491455-26491502)
chr8 (100-149)||(4366335-4366384)
[»] chr6 (1 HSPs)
chr6 (102-149)||(2656431-2656478)
[»] chr4 (2 HSPs)
chr4 (100-147)||(26194538-26194585)
chr4 (109-149)||(36860302-36860342)
[»] scaffold0191 (1 HSPs)
scaffold0191 (103-147)||(4544-4588)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 26440002 - 26440132
Alignment:
Q  18 caattgctgaacgaacatttgcttataacaaggaacatagggattgcactattaaaaaatgggaaatgttaacgagtgccctttgttaaagaattataaa 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  26440002 caattgctgaacgaacatttgcttataacaaggaacatatggaatgtactattaaaaaatgggaaatgttaacgagtg-tctttgttaaggaattataaa 26440100  T
Q  118 atgaaatattatattggaaattttgtattcta 149  Q
    |||||||||  | || |||||| |||||||||    
T  26440101 atgaaatatctttttagaaattgtgtattcta 26440132  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 26296497 - 26296450
Alignment:
Q  102 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 149  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  26296497 gttaaagaattataaaaggaaatattgtattggaaattgtgtattcta 26296450  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 26440197 - 26440236
Alignment:
Q  214 atctttactagtgccccggagacactgcctttaaaaaatt 253  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  26440197 atcttaactagtgccccggagacactgcatttaaaaaatt 26440236  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 14148386 - 14148336
Alignment:
Q  99 tttgttaaagaattataaaatgaaatattatattggaaattttgtattcta 149  Q
    |||||||| ||||||||||| || ||||||| ||||||||| |||||||||    
T  14148386 tttgttaaggaattataaaaagacatattatcttggaaattgtgtattcta 14148336  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 50662541 - 50662494
Alignment:
Q  102 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 149  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  50662541 gttaaggaattataaaataaaatattatattggaaattttctattcta 50662494  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 40892798 - 40892842
Alignment:
Q  105 aaagaattataaaatgaaatattatattggaaattttgtattcta 149  Q
    |||||||||||||| |||||||| | ||||||||| |||||||||    
T  40892798 aaagaattataaaaggaaatattttcttggaaattgtgtattcta 40892842  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 26491455 - 26491502
Alignment:
Q  102 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 149  Q
    ||||||||||||||||| |||||||| ||||||||||| ||| |||||    
T  26491455 gttaaagaattataaaaggaaatattgtattggaaattgtgtgttcta 26491502  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 4366384 - 4366335
Alignment:
Q  100 ttgttaaagaattataaaatgaaatattatattggaaattttgtattcta 149  Q
    ||||||| |||| ||||||||||||||||| ||| ||||| |||||||||    
T  4366384 ttgttaaggaatcataaaatgaaatattattttgaaaattatgtattcta 4366335  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 2656431 - 2656478
Alignment:
Q  102 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 149  Q
    ||||| |||||||||||  ||||||||||||||||||| |||||||||    
T  2656431 gttaaggaattataaaagaaaatattatattggaaattgtgtattcta 2656478  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 26194538 - 26194585
Alignment:
Q  100 ttgttaaagaattataaaatgaaatattatattggaaattttgtattc 147  Q
    ||||||| |||||||||||||||||||||| ||| ||||| |||||||    
T  26194538 ttgttaaggaattataaaatgaaatattatcttgtaaattgtgtattc 26194585  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 36860302 - 36860342
Alignment:
Q  109 aattataaaatgaaatattatattggaaattttgtattcta 149  Q
    |||||||||| |||||||| ||||||||||| |||||||||    
T  36860302 aattataaaaagaaatattgtattggaaattgtgtattcta 36860342  T

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Target: scaffold0191 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 4544 - 4588
Alignment:
Q  103 ttaaagaattataaaatgaaatattatattggaaattttgtattc 147  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||    
T  4544 ttaaagaataataaaatgaaatattgtattgaaaattgtgtattc 4588  T

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