View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3612_high_4 (Length: 408)

Name: NF3612_high_4
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3612_high_4
NF3612_high_4
[»] chr8 (4 HSPs)
chr8 (142-389)||(34343926-34344189)
chr8 (1-76)||(34343785-34343860)
chr8 (300-328)||(4942572-4942600)
chr8 (300-328)||(42143923-42143951)
[»] chr1 (2 HSPs)
chr1 (142-389)||(36204310-36204575)
chr1 (1-76)||(36204642-36204717)
[»] chr7 (2 HSPs)
chr7 (142-389)||(43738579-43738842)
chr7 (1-45)||(43738463-43738507)
[»] chr4 (1 HSPs)
chr4 (292-389)||(39186909-39187006)
[»] chr6 (1 HSPs)
chr6 (142-256)||(31429217-31429331)
[»] chr3 (2 HSPs)
chr3 (246-305)||(20812485-20812544)
chr3 (299-379)||(20812393-20812476)
[»] chr5 (1 HSPs)
chr5 (299-357)||(32029991-32030049)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 142 - 389
Target Start/End: Original strand, 34343926 - 34344189
Alignment:
Q  142 gagtaaaagttggcttcggagagggcaaacatgagaaattaggatatatttgcttcatctgtagtttatgaaaagnnnnnnnggaagaatcaattctgac 241  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||       ||||||||  ||||||||    
T  34343926 gagtaaaagttggcttcggagggggcaaacatgagaaattaggatatatttgctttatctgtagtttatgaaaagtttttttggaagaattgattctgac 34344025  T
Q  242 caaacgcagaagctatgaatctgagcttcaggaaaactggcgttttgaagcaaaa---------------tcactttttcattcatccaaacaacatgaa 326  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||               ||||||||||||||||||||||||||||||    
T  34344026 caaacgcaaaagctatgaatctgagcttcaggaaaactgacgttttgaagcaaaatcacgttttacaaactcactttttcattcatccaaacaacatgaa 34344125  T
Q  327 aaattgaaaaacacagtttgggaac-aaaaaaccacgtttgggagctgaaaacgtggtgccaaa 389  Q
    |||||||||||| |||||| | ||| ||||||| ||||||||||||||||||||||||||||||    
T  34344126 aaattgaaaaacgcagtttagaaacaaaaaaactacgtttgggagctgaaaacgtggtgccaaa 34344189  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34343785 - 34343860
Alignment:
Q  1 tgagcgttcgccgcaaaggaataacgagaagctgaaacacaagcagtgatatcaaaaatgtatccgatacattatg 76  Q
    ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  34343785 tgagcgttcgccgcaaaggaataacgaaaagctcaagcacaagcagtgatatcaaaaatgtatccgatacattatg 34343860  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 328
Target Start/End: Original strand, 4942572 - 4942600
Alignment:
Q  300 ctttttcattcatccaaacaacatgaaaa 328  Q
    |||||||||||||||||||||||||||||    
T  4942572 ctttttcattcatccaaacaacatgaaaa 4942600  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 328
Target Start/End: Original strand, 42143923 - 42143951
Alignment:
Q  300 ctttttcattcatccaaacaacatgaaaa 328  Q
    |||||||||||||||||||||||||||||    
T  42143923 ctttttcattcatccaaacaacatgaaaa 42143951  T

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Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 142 - 389
Target Start/End: Complemental strand, 36204575 - 36204310
Alignment:
Q  142 gagtaaaagttggcttcggagagggcaaacatgagaaattaggatatatttgcttcatctgtagtttatgaaaagnnnnnnn--ggaagaatcaattctg 239  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |||  |||||||||||         ||||||||||||||||    
T  36204575 gagtaaaagttggcttcggagggggcaaacatgagaaattatgatatatttgctttatttgtcatttatgaaaagtttttttttggaagaatcaattctg 36204476  T
Q  240 accaaacgcagaagctatgaatctgagcttcag-gaaaactggcgttttgaagcaaaatcac---------------tttttcattcatccaaacaacat 323  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||               |||||||||||||||||||||||    
T  36204475 accaaatgcagaagctatgaatctgagcttcagagaaaactggcgttttgaagcaaaatcacgttttacaaactcactttttcattcatccaaacaacat 36204376  T
Q  324 gaaaaattgaaaaacacagtttgggaacaaaaaaccacgtttgggagctgaaaacgtggtgccaaa 389  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36204375 gaaaaattggaaaacgcagtttgggaacaaaaaaccacgtttgggagctgaaaacgtggtgccaaa 36204310  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36204717 - 36204642
Alignment:
Q  1 tgagcgttcgccgcaaaggaataacgagaagctgaaacacaagcagtgatatcaaaaatgtatccgatacattatg 76  Q
    ||||||||||| |||| |||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  36204717 tgagcgttcgctgcaagggaataacgagaagctcaagcacaagcagtgatatcaaaaatatatccgatacattatg 36204642  T

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Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 142 - 389
Target Start/End: Original strand, 43738579 - 43738842
Alignment:
Q  142 gagtaaaagttggcttcggagagggcaaacatgagaaattaggatatatttgcttcatctgtagtttatgaaaagnnnnnnnggaagaatcaattctgac 241  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||||       ||||||||| ||||||||    
T  43738579 gagtaaaagttggcttcggagggggcaaacatgagaaattaggatatatttgttttatctgtcgtttatgaaaagtttttttggaagaatcgattctgac 43738678  T
Q  242 caaacgcagaagctatgaatctgagcttcag-gaaaactggcgttttgaagcaaaa---------------tcactttttcattcatccaaacaacatga 325  Q
    |||||||| |||||||||||||||||||||| |||||||| |||||||||||||||               ||||||||||||||||||||||||| |||    
T  43738679 caaacgcataagctatgaatctgagcttcagagaaaactgacgttttgaagcaaaaccacgttttacaaactcactttttcattcatccaaacaacgtga 43738778  T
Q  326 aaaattgaaaaacacagtttgggaacaaaaaaccacgtttgggagctgaaaacgtggtgccaaa 389  Q
    ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  43738779 aaaattgaaaaacgcagtttaggaacaaaaaaccatgtttgggagctgaaaacgtggggccaaa 43738842  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43738463 - 43738507
Alignment:
Q  1 tgagcgttcgccgcaaaggaataacgagaagctgaaacacaagca 45  Q
    |||||||||||||||| |||||||||||||||| || ||||||||    
T  43738463 tgagcgttcgccgcaagggaataacgagaagctcaagcacaagca 43738507  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 39187006 - 39186909
Alignment:
Q  292 caaaatcactttttcattcatccaaacaacatgaaaaattgaaaaacacagtttgggaacaaaaaaccacgtttgggagctgaaaacgtggtgccaaa 389  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||| |||||||  ||| ||||||||||||||   |||||||||||| |||||||    
T  39187006 caaactcactttttcattcatccaaacaacatgaaaaatggcaaaacgcagtttgacaactaaaaaccacgtttgaaggctgaaaacgtgatgccaaa 39186909  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 31429217 - 31429331
Alignment:
Q  142 gagtaaaagttggcttcggagagggcaaacatgagaaattaggatatatttgcttcatctgtagtttatgaaaagnnnnnnnggaagaatcaattctgac 241  Q
    |||||| |||||||||||||  |||||| ||||||| |||||||||||| ||||| |||| | ||||||||||||        |||||||| ||||||||    
T  31429217 gagtaacagttggcttcggatggggcaagcatgagagattaggatatatctgctttatcttttgtttatgaaaagttttttgtgaagaatcgattctgac 31429316  T
Q  242 caaacgcagaagcta 256  Q
    ||||| |||||||||    
T  31429317 caaacacagaagcta 31429331  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 20812544 - 20812485
Alignment:
Q  246 cgcagaagctatgaatctgagcttcaggaaaactggcgttttgaagcaaaatcacttttt 305  Q
    |||||||||||  ||||| |||||||||||||||||| ||||||| ||||||||| ||||    
T  20812544 cgcagaagctacaaatcttagcttcaggaaaactggctttttgaaccaaaatcacgtttt 20812485  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 20812476 - 20812393
Alignment:
Q  299 actttttcattcatccaaacaacatgaaaaattgaaaaacacagtttgg---gaacaaaaaaccacgtttgggagctgaaaacg 379  Q
    |||||||||||||||||||||||||| |||||  | |||| |||| |||    || |||||||||||||| | |||||||||||    
T  20812476 actttttcattcatccaaacaacatggaaaatgcagaaacgcagtctggcaaaaaaaaaaaaccacgttttgaagctgaaaacg 20812393  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 32030049 - 32029991
Alignment:
Q  299 actttttcattcatccaaacaacatgaaaaattgaaaaacacagtttgggaacaaaaaa 357  Q
    |||||||||||||||||||||||||| |||||  | |||| |||||||| || ||||||    
T  32030049 actttttcattcatccaaacaacatggaaaatgcagaaacgcagtttggcaaaaaaaaa 32029991  T

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