View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3612_high_5 (Length: 398)
Name: NF3612_high_5
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3612_high_5 |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 35629355 - 35629093
Alignment:
| Q |
1 |
aataacatgatgcatgctaatctgggacgtggcaatgggaacaggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtctt |
100 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35629355 |
aatagcatgatgcatgctaatctgggacgtggcgatgggaacaggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcgt |
35629256 |
T |
|
| Q |
101 |
ttctgaggatgcccatacataatttgtcctacaaaagctcatctgacagacctacaccatctgcttttgcacggtctggattaaccactcattggctgca |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35629255 |
ttctgaggatgcccgtacataatttgtcctacaaaagctcatctgacagacctacaccatctgcttttgcacggtctggattaaccactcattggctgca |
35629156 |
T |
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| Q |
201 |
gaggctgaagaagactattaaagactggtttaaaggaagttcatcgcatgcatctggctctca |
263 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
35629155 |
gaggctgaagaagactattaaagaccggtttaaaggaagttcatcgaatgcatctggctctca |
35629093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 35635775 - 35635528
Alignment:
| Q |
1 |
aataacatgatgcatgctaatctgggacgtggcaatgggaacaggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtctt |
100 |
Q |
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|||| ||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
35635775 |
aataccatgaagaatgctaatctgggacgtggcgatgggaacaggaggtattttcatgatgatataagtgtgattgttgtgttcttggacaaaaagtcga |
35635676 |
T |
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| Q |
101 |
ttctgaggatgcccatacataatttgtcctacaaaagctcatctgacagacctacaccatctgcttttgcacggtctggattaaccactcattggctgca |
200 |
Q |
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| T |
35635675 |
ttctgaggatgcccctacataatttgtcctacaaaagctcatctgccagacctacaacatcagcttttgcagagtctggattaaccatgcatgggctgca |
35635576 |
T |
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| Q |
201 |
gaggctgaagaagactattaaagactggtttaaaggaagttcatcgca |
248 |
Q |
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||||||| |||||||||||||| || ||||| ||| |||||||||||| |
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| T |
35635575 |
gaggctgcagaagactattaaaaaccggtttcaagcaagttcatcgca |
35635528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 257 - 383
Target Start/End: Complemental strand, 35629060 - 35628934
Alignment:
| Q |
257 |
gctctcaaactcagagccttttaggtcagagttctcgggctcagagtccttggaagaatcttaaacagaattagtagaacaaggtggattccttgcactt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35629060 |
gctctcaaactcagagccttttaggtcagagttctcgggctcagagtccttggaagaatcttaaacagaattagtagaacaaggtggattccttgcagtt |
35628961 |
T |
|
| Q |
357 |
tatgataaggttgatacagttacatat |
383 |
Q |
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|||||||||||||||| ||||| |||| |
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| T |
35628960 |
tatgataaggttgatagagttatatat |
35628934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 35632479 - 35632337
Alignment:
| Q |
42 |
caggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcttttctgaggatgcccatacataatttgtcctacaaaagctca |
141 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||| | ||||| || ||||||||| || | |||||||||||||||||| | ||||| |
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| T |
35632479 |
caggaggtcttttcatgatgatataagtgtcattgttttgttcttggccaaaaagttgtttctgaggcggcgcgtacataatttgtcctacatatgctca |
35632380 |
T |
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| Q |
142 |
tctgacagacctacaccatctgcttttgcacggtctggattaa |
184 |
Q |
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| T |
35632379 |
tttgacacgcctctgccatctgattttgcacggtctggattaa |
35632337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 35634328 - 35634252
Alignment:
| Q |
42 |
caggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcttttctgaggatgcccatac |
118 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| || ||||| |
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| T |
35634328 |
caggaggtcttttcgtgatgatataagtgtgattgttgtgttctttgacaaaaattcgtttctgaggaggcgcatac |
35634252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 35635486 - 35635446
Alignment:
| Q |
257 |
gctctcaaactcagagccttttaggtcagagttctcgggct |
297 |
Q |
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| T |
35635486 |
gctctcaaactcagagccttttgggtcagagttctcgggct |
35635446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 35634073 - 35634012
Alignment:
| Q |
257 |
gctctcaaactcagagccttttaggt---cagagttctcgggctcagagtccttggaagaat |
315 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||| |
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| T |
35634073 |
gctctcaaactcagagccttttgggtggtcagagttctcgggctcagagcccttgaaagaat |
35634012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 10319972 - 10320117
Alignment:
| Q |
44 |
ggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcttttctgaggatgcccatacataatttgtcctacaaaagctcatc |
143 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |||| ||| ||| |||||||||||||| | ||||||| |
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| T |
10319972 |
ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacacaggctcatc |
10320071 |
T |
|
| Q |
144 |
tgacagacctacaccatctgcttttgcacggtctggattaaccact |
189 |
Q |
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|||||| ||| || ||| | |||||||| | ||||||||||||| |
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| T |
10320072 |
tgacaggcctgtacaatcagattttgcacaatttggattaaccact |
10320117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 10337088 - 10337233
Alignment:
| Q |
44 |
ggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcttttctgaggatgcccatacataatttgtcctacaaaagctcatc |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |||| ||| ||| |||||||||||||| | ||||||| |
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| T |
10337088 |
ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacacaggctcatc |
10337187 |
T |
|
| Q |
144 |
tgacagacctacaccatctgcttttgcacggtctggattaaccact |
189 |
Q |
| |
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|||||| ||| || ||| | |||||||| | ||||||||||||| |
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| T |
10337188 |
tgacaggcctgtacaatcagattttgcacaatttggattaaccact |
10337233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 10299540 - 10299685
Alignment:
| Q |
44 |
ggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcttttctgaggatgcccatacataatttgtcctacaaaagctcatc |
143 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |||| ||| ||| |||||||||||||| | ||||||| |
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| T |
10299540 |
ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacacaggctcatc |
10299639 |
T |
|
| Q |
144 |
tgacagacctacaccatctgcttttgcacggtctggattaaccact |
189 |
Q |
| |
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||||| ||| || ||| | |||||||| | ||||||||||||| |
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| T |
10299640 |
tgacatgcctgtacaatcagattttgcacaatttggattaaccact |
10299685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 2780 - 2744
Alignment:
| Q |
261 |
tcaaactcagagccttttaggtcagagttctcgggct |
297 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2780 |
tcaaactcagagccttttaggtcagagttctcgggct |
2744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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