View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3612_high_6 (Length: 392)
Name: NF3612_high_6
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3612_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 1946226 - 1946590
Alignment:
| Q |
12 |
tcatcacattgtttcccctaaacatcacctcaccgatggtttttgcatcagccggcacactcttcattgtaacaggatcttttatatcaagttcgtccat |
111 |
Q |
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| T |
1946226 |
tcatcacattgtttcccctaaacatcacctcaccgatggtttttgcatcagccggcacactcttcattgtagcaggatcttttatatcaagttcgtccat |
1946325 |
T |
|
| Q |
112 |
tccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggaggtagactagcccattctggcttccatgtgcaaattgaagcaggacca |
211 |
Q |
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| T |
1946326 |
tccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggaggtagactagcccattctggcttccatgtgcaaattgaagcaggacca |
1946425 |
T |
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| Q |
212 |
taagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcatcacta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1946426 |
taagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcatcacta |
1946525 |
T |
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| Q |
312 |
ccaccttcccagaaagcagcttcctaattggtgaatttattaacatgttcagaagtgctggtgct |
376 |
Q |
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| T |
1946526 |
ccaccttcccagaaagcggcttcctaattggtgaatttattaacatgttcagaagtgctggtgct |
1946590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 1928108 - 1928416
Alignment:
| Q |
12 |
tcatcacattgtttcccctaaacatcacctcaccgatggtttttgcatcagccggcacactcttcattgtaacaggatcttttatatcaagttcgtccat |
111 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||| | |||| |
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| T |
1928108 |
tcatcacagtgtttcccctaaacatcacctcacccatggttttcgcatcagccggtacactcttcattgtgacaggatcttttatgtcaagtccttccag |
1928207 |
T |
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| Q |
112 |
tccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggaggtagactagcccattctggcttccatgtgcaaattgaagcaggacca |
211 |
Q |
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||||| ||||||||||||||||||| | || ||||||||||| | ||| ||| || ||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
1928208 |
tccaatatgttgtactccttgacgcgacttctttttcgcctgctcctctcgagacaggctactccattctggtttccatgtgcaaattgatccaggacca |
1928307 |
T |
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| Q |
212 |
taagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcatcacta |
311 |
Q |
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|||||||| |||| |||||||| |||| || || |||||||||||||||| ||| |||| | || ||||| ||||||||||| || ||||||||| |
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| T |
1928308 |
taagtttctgtcaaaccatatgaatgaactaaatcaaatcctagttcttccatcctaaaaaatacgtccggtggcggtggagcaccacctgtcatcacta |
1928407 |
T |
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| Q |
312 |
ccaccttcc |
320 |
Q |
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||||||||| |
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| T |
1928408 |
ccaccttcc |
1928416 |
T |
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