View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3612_low_10 (Length: 284)
Name: NF3612_low_10
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3612_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 31055861 - 31055616
Alignment:
| Q |
22 |
agagaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatg |
121 |
Q |
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| T |
31055861 |
agagaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatg |
31055762 |
T |
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| Q |
122 |
tacctgaaaaacagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttataaaacaaaagcagaaggtattgaaaacca |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31055761 |
tacctgaaaaacagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttataaaacaaaagcagaaggtattgaaaatca |
31055662 |
T |
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| Q |
222 |
tacactggtaactgtctgttcttcggaaaggcataaccctcttgtt |
267 |
Q |
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| T |
31055661 |
tacactggcaactgtctgttcttcggaaaggcataaccctcttgtt |
31055616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 34742763 - 34742869
Alignment:
| Q |
24 |
agaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatgta |
123 |
Q |
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||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||| |||||| || | || ||| ||||||||| ||| || |||||||| |
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| T |
34742763 |
agaacaagaattgctgtaacttcacattttcttatcagcttttgaggttgagttctcatcccaataagtctatggcctccaattcttggccttctatgta |
34742862 |
T |
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| Q |
124 |
cctgaaa |
130 |
Q |
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|||||| |
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| T |
34742863 |
tctgaaa |
34742869 |
T |
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