View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3612_low_17 (Length: 250)
Name: NF3612_low_17
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3612_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 10296073 - 10295840
Alignment:
| Q |
1 |
caactaattcgtggaaaggtgaagttttttgagataatgatgctgacttcgaagaaagactagttccaaccacaatcaccagcttacttccaaacttgac |
100 |
Q |
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| T |
10296073 |
caactaattcgtggaaaggtgaagttttttgagataatgatgctgacttcgaagaaagactagttccaaccacaatcaccagcttacttccaaacttgac |
10295974 |
T |
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| Q |
101 |
tagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtggatccacacaacatatgtcagacgaatatgtacca |
200 |
Q |
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| T |
10295973 |
tagttccattgattttacttctccatgttcaagttcaaaagacgccagtactgacccacttagtggatccacacaacatatgtcagacgaatatgtacca |
10295874 |
T |
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| Q |
201 |
tgattcagttcagtcctcattacaagcaacatcc |
234 |
Q |
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| T |
10295873 |
tgattcagttcagtcctcattacaagcaacatcc |
10295840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 233
Target Start/End: Original strand, 43797011 - 43797190
Alignment:
| Q |
57 |
agactagttccaaccacaatcaccagcttacttccaaacttgactagttccattgattttact---tctccatgttcaagttcaaaagacgccagtactg |
153 |
Q |
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| T |
43797011 |
agactagttccaaccacaagcacctgctcacttccaaccctaattaattccatggatgttgctgtttctccaagttctagtctaaaagacgatagtactg |
43797110 |
T |
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| Q |
154 |
acccacttagtggatccacacaacatatgtcagacgaatatgtaccatgattcagttcagtcctcattacaagcaacatc |
233 |
Q |
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| T |
43797111 |
acccgcttaggggatccacacaacatatgtcagacaaacatgtaccaatactcagttcggtcctcatcacaagtaacatc |
43797190 |
T |
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