View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3612_low_2 (Length: 614)

Name: NF3612_low_2
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3612_low_2
NF3612_low_2
[»] chr3 (22 HSPs)
chr3 (16-597)||(25365443-25366028)
chr3 (461-573)||(24204983-24205095)
chr3 (512-573)||(15864838-15864899)
chr3 (460-572)||(21149073-21149185)
chr3 (520-576)||(52369777-52369833)
chr3 (460-503)||(25211605-25211648)
chr3 (521-571)||(3730167-3730217)
chr3 (520-573)||(12704658-12704711)
chr3 (454-506)||(14829773-14829825)
chr3 (520-572)||(25074795-25074847)
chr3 (483-571)||(26665143-26665231)
chr3 (525-572)||(20691325-20691372)
chr3 (461-508)||(25775577-25775624)
chr3 (460-575)||(33006826-33006936)
chr3 (524-570)||(1830351-1830397)
chr3 (519-573)||(8903437-8903490)
chr3 (271-324)||(25173432-25173486)
chr3 (521-571)||(25892467-25892517)
chr3 (522-572)||(34189433-34189483)
chr3 (484-525)||(51512142-51512183)
chr3 (520-572)||(14223854-14223906)
chr3 (460-508)||(40052382-40052430)
[»] chr8 (12 HSPs)
chr8 (460-571)||(39820436-39820546)
chr8 (482-573)||(35431103-35431194)
chr8 (512-573)||(1676717-1676778)
chr8 (460-573)||(30067969-30068082)
chr8 (521-571)||(13845241-13845291)
chr8 (520-594)||(40063935-40064009)
chr8 (461-531)||(44067574-44067644)
chr8 (520-584)||(13009494-13009558)
chr8 (460-508)||(36450695-36450743)
chr8 (526-589)||(3025540-3025603)
chr8 (521-571)||(28883880-28883930)
chr8 (520-573)||(44067521-44067574)
[»] chr4 (13 HSPs)
chr4 (460-572)||(18513176-18513294)
chr4 (460-571)||(31243477-31243600)
chr4 (527-592)||(47191001-47191066)
chr4 (460-573)||(24343512-24343631)
chr4 (520-573)||(3144653-3144706)
chr4 (520-573)||(20743279-20743332)
chr4 (460-571)||(12895215-12895326)
chr4 (460-508)||(34306745-34306793)
chr4 (460-573)||(39507060-39507173)
chr4 (460-508)||(10133779-10133827)
chr4 (525-569)||(11110212-11110256)
chr4 (460-508)||(40965341-40965389)
chr4 (529-569)||(49659533-49659573)
[»] chr6 (16 HSPs)
chr6 (482-573)||(12235482-12235573)
chr6 (461-570)||(26178620-26178732)
chr6 (520-573)||(6389748-6389801)
chr6 (520-573)||(34446570-34446623)
chr6 (520-572)||(17168464-17168516)
chr6 (520-573)||(12086346-12086399)
chr6 (460-503)||(3209474-3209517)
chr6 (460-499)||(17341622-17341661)
chr6 (520-570)||(30781295-30781345)
chr6 (523-576)||(6299514-6299567)
chr6 (523-576)||(6306324-6306377)
chr6 (525-570)||(9195760-9195805)
chr6 (505-594)||(13689179-13689268)
chr6 (520-573)||(26247431-26247484)
chr6 (515-567)||(7752137-7752189)
chr6 (520-572)||(19602182-19602234)
[»] chr7 (13 HSPs)
chr7 (460-573)||(23751905-23752017)
chr7 (520-594)||(29812665-29812739)
chr7 (522-590)||(22683758-22683826)
chr7 (460-573)||(38804490-38804609)
chr7 (482-572)||(12278841-12278931)
chr7 (520-573)||(23930224-23930277)
chr7 (520-576)||(17780085-17780141)
chr7 (522-573)||(4017797-4017848)
chr7 (476-568)||(7133229-7133327)
chr7 (460-509)||(24105747-24105796)
chr7 (520-573)||(43249998-43250051)
chr7 (276-323)||(3457939-3457987)
chr7 (263-323)||(29841882-29841942)
[»] scaffold0199 (1 HSPs)
scaffold0199 (512-573)||(1954-2015)
[»] chr5 (15 HSPs)
chr5 (460-572)||(2577120-2577233)
chr5 (461-573)||(7997108-7997220)
chr5 (520-571)||(43554528-43554579)
chr5 (521-583)||(18607099-18607161)
chr5 (460-572)||(19737422-19737535)
chr5 (520-569)||(39696000-39696049)
chr5 (521-570)||(31264446-31264495)
chr5 (529-573)||(42469226-42469270)
chr5 (456-495)||(13287350-13287389)
chr5 (522-564)||(26205763-26205805)
chr5 (460-502)||(27932311-27932353)
chr5 (519-572)||(37472597-37472650)
chr5 (460-508)||(2436981-2437029)
chr5 (520-572)||(5467979-5468031)
chr5 (164-208)||(14731866-14731910)
[»] chr1 (14 HSPs)
chr1 (520-573)||(42004948-42005001)
chr1 (482-570)||(30847682-30847771)
chr1 (521-573)||(6936402-6936454)
chr1 (526-590)||(40747780-40747844)
chr1 (163-249)||(12241346-12241432)
chr1 (476-570)||(38075926-38076021)
chr1 (524-594)||(39101187-39101257)
chr1 (519-584)||(6573983-6574048)
chr1 (522-573)||(11634127-11634178)
chr1 (512-572)||(373053-373114)
chr1 (460-509)||(9630562-9630611)
chr1 (461-510)||(16297223-16297272)
chr1 (460-573)||(22794019-22794132)
chr1 (460-508)||(2218298-2218346)
[»] chr2 (12 HSPs)
chr2 (520-572)||(23354653-23354705)
chr2 (520-572)||(24011042-24011094)
chr2 (513-576)||(12748686-12748749)
chr2 (479-572)||(18570978-18571071)
chr2 (520-590)||(25544469-25544539)
chr2 (522-572)||(10535762-10535812)
chr2 (460-512)||(10535686-10535738)
chr2 (520-568)||(11308005-11308053)
chr2 (520-572)||(23354996-23355048)
chr2 (525-572)||(34006997-34007044)
chr2 (522-572)||(38919212-38919262)
chr2 (460-509)||(29367284-29367333)
[»] scaffold0007 (1 HSPs)
scaffold0007 (461-531)||(225199-225269)
[»] scaffold0598 (1 HSPs)
scaffold0598 (520-573)||(8054-8107)
[»] scaffold0020 (1 HSPs)
scaffold0020 (460-508)||(135264-135312)
[»] scaffold0003 (1 HSPs)
scaffold0003 (460-529)||(236915-236984)


Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 16 - 597
Target Start/End: Complemental strand, 25366028 - 25365443
Alignment:
Q  16 caatttttacatgccatattgtataaggaaaatggtaaatcagcatcaaggagcaagcaatgtttacaaaaaggatataacttagtgtttttcatggtga 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25366028 caatttttacatgccatattatataaggaaaatggtaaatcagcaccaaggagcaagcaatgtttacaaaaaggatataacttagtgtttttcatggtga 25365929  T
Q  116 tgtttgtgttgtaatgtgaacaaaaaagagcaaatactcaattgatcattgaaattgtaagattgtaacaatttagtccctcgcattatcgattatttta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25365928 tgtttgtgttgtaatgtgaacaaaaaagagcaaatactcaattgatcattgaaattgtaagattgtaacaatttagtcactcgcattatcgattatttta 25365829  T
Q  216 aaatgattcttaaatctcaaaatgttaatcaaatcatctctctggtagtatttttaaggtctagaatgacattaagttgtaatattgaggatgaatttga 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25365828 aaatgattcctaaatctcaaaatgttaatcaaatcatctctctggtagtatttttaaggtctagaatgacattaagttgtaatattgaggatgaatttga 25365729  T
Q  316 aattaagttcatgtttgggatcacggtggcttttctggaataacagcgagtcaccataatagctacattttgttgctttcacaaaatataagtgaat--- 412  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  25365728 aattaagttcatgtttgggatcacagtggcttttctggaataacagcgagtcaccataatagctacattttgttgctttcacaaaatataagtgaataat 25365629  T
Q  413 -aatggcagacatgcatttgataacaaattcaaacaaggtagaaaatgtatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacaca 511  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25365628 gaatggcagacatgcatttgataacaaattcaaacaaggtagaaaatgtatgaagcacatacattcctcagattaggcgtgtcctggtgtcgaacacaca 25365529  T
Q  512 tcggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgtcgtgttct 597  Q
    ||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25365528 tcggtgtccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatccatgccggtgtctgtgtcgtgttct 25365443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 461 - 573
Target Start/End: Original strand, 24204983 - 24205095
Alignment:
Q  461 atgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattct 560  Q
    |||||||||  ||| |||||  ||||||||||||||||||||| |||| | || |||| ||||||||||| ||| |||||||   |||||||||| ||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttct 24205082  T
Q  561 caaattattatcc 573  Q
    |||||||||||||    
T  24205083 caaattattatcc 24205095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 512 - 573
Target Start/End: Complemental strand, 15864899 - 15864838
Alignment:
Q  512 tcggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||| ||||||||||||||||||||||| ||||||| |||| || ||||||||||||||    
T  15864899 tcggtgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatcc 15864838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 572
Target Start/End: Complemental strand, 21149185 - 21149073
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgaca-cgacacctatgattacaccaaattatgtcatatt 558  Q
    |||||| |||| ||||||||| ||||||| |||| | ||||||  |||||| | ||||| ||||| ||||| || |||||||||  ||||||||||| ||    
T  21149185 tatgaaacacagacattcctcggattaggtgtgttc-ggtgtcagacacacgttggtgtccgacaacgacatctttgattacactgaattatgtcatttt 21149087  T
Q  559 ctcaaattattatc 572  Q
    ||||||||||||||    
T  21149086 ctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 520 - 576
Target Start/End: Complemental strand, 52369833 - 52369777
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatg 576  Q
    ||||||||||||||||||||||   |||||||| || ||||||||||||||||||||    
T  52369833 cgacacgacacctatgattacattgaattatgtaattttctcaaattattatccatg 52369777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 503
Target Start/End: Complemental strand, 25211648 - 25211605
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcg 503  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  25211648 tatgaagcacaaacacttctcagattaggcgtgtcctggtgtcg 25211605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 571
Target Start/End: Original strand, 3730167 - 3730217
Alignment:
Q  521 gacacgacacctatgattacaccaaattatgtcatattctcaaattattat 571  Q
    ||||||||||||||||||||||  |||||||||||  ||||||||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 12704658 - 12704711
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||||||||||||||||||   ||||||||||| || ||||||||||||||    
T  12704658 cgacacgacacctatgattacattgaattatgtcattttttcaaattattatcc 12704711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 14829825 - 14829773
Alignment:
Q  454 aaaatgtatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaac 506  Q
    ||||| || |||||||  |||||||||||||||||||||||| ||||||||||    
T  14829825 aaaatctacgaagcacggacattcctcagattaggcgtgtcccggtgtcgaac 14829773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 25074847 - 25074795
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    |||||| || |||||||||||||  ||||||||||| ||||||||||||||||    
T  25074847 cgacacaacgcctatgattacactcaattatgtcattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 571
Target Start/End: Complemental strand, 26665231 - 26665143
Alignment:
Q  483 attaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattat 571  Q
    |||||| |||| ||||||||| |||| | ||||||| ||||||||| ||||| ||||||   ||| | ||||| |||||||||||||||    
T  26665231 attaggggtgttctggtgtcggacacgcttcggtgtccgacacgacgcctataattacagtgaatcacgtcattttctcaaattattat 26665143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 572
Target Start/End: Complemental strand, 20691372 - 20691325
Alignment:
Q  525 cgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  20691372 cgacacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 508
Target Start/End: Complemental strand, 25775624 - 25775577
Alignment:
Q  461 atgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacac 508  Q
    ||||||||| |||| ||||| |||||||||||||||||||||| ||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcggacac 25775577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 575
Target Start/End: Complemental strand, 33006936 - 33006826
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattc 559  Q
    ||||||||||| |||||||||||||||| |||||| | |||||  || ||| |||||||      ||||||||| ||||| ||  |||||||| || ||     
T  33006936 tatgaagcacatacattcctcagattagacgtgtcatagtgtcagactcacgtcggtgt-----ccgacacctacgattaaactgaattatgtaatttta 33006842  T
Q  560 tcaaattattatccat 575  Q
    ||||||||||||||||    
T  33006841 tcaaattattatccat 33006826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  524 acgacacctatgattacaccaaattatgtcatattctcaaattatta 570  Q
    |||||||||||||||||||  ||||||||||| |||| |||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 573
Target Start/End: Complemental strand, 8903490 - 8903437
Alignment:
Q  519 tcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    |||||||||||||||| ||||||| ||| |||||||| |||||||| ||||||||    
T  8903490 tcgacacgacacctataattacactaaa-tatgtcattttctcaaaatattatcc 8903437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 25173432 - 25173486
Alignment:
Q  271 aaggtctagaatgacattaagtt-gtaatattgaggatgaatttgaaattaagtt 324  Q
    |||| |||||||||||||||||| ||||||| || ||||||||||||| ||||||    
T  25173432 aaggactagaatgacattaagttggtaatatcgaagatgaatttgaaactaagtt 25173486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 571
Target Start/End: Complemental strand, 25892517 - 25892467
Alignment:
Q  521 gacacgacacctatgattacaccaaattatgtcatattctcaaattattat 571  Q
    ||||||||||||||||||||||  |||||| |||| |||| ||||||||||    
T  25892517 gacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 572
Target Start/End: Complemental strand, 34189483 - 34189433
Alignment:
Q  522 acacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    |||||||||||| ||||||||  || |||||||| ||||||||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatc 34189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 525
Target Start/End: Original strand, 51512142 - 51512183
Alignment:
Q  484 ttaggcgtgtcctggtgtcgaacacacatcggtgttcgacac 525  Q
    |||||||||||||||||||  |||| ||||||||||||||||    
T  51512142 ttaggcgtgtcctggtgtcagacacgcatcggtgttcgacac 51512183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 14223854 - 14223906
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||||||| ||||| ||||| ||||||| || | ||||||||||||||||    
T  14223854 cgacacgacacttatgaatacactaaattatatcgttttctcaaattattatc 14223906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 508
Target Start/End: Complemental strand, 40052430 - 40052382
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacac 508  Q
    |||||||||| |||| ||||| |||||||||||||| ||||||| ||||    
T  40052430 tatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacac 40052382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 571
Target Start/End: Complemental strand, 39820546 - 39820436
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattc 559  Q
    ||||||||||  ||| | ||| |||||||||||||| | ||||| |||| | ||||||| ||||||||||||||||||||||| ||||||| |||| |||    
T  39820546 tatgaagcacggacacttctcggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcattttc 39820448  T
Q  560 tcaaattattat 571  Q
    ||||||||||||    
T  39820447 tcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 482 - 573
Target Start/End: Original strand, 35431103 - 35431194
Alignment:
Q  482 gattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||| |||||||||||| | | |  ||||| ||| ||||||||||||||||||||||| ||| |||||||| |||||||||||||||||    
T  35431103 gattaggggtgtcctggtgttggatatgcatcgatgtccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatcc 35431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 512 - 573
Target Start/End: Complemental strand, 1676778 - 1676717
Alignment:
Q  512 tcggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||    
T  1676778 tcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatcc 1676717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 573
Target Start/End: Original strand, 30067969 - 30068082
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattc 559  Q
    ||||||||||  ||| || || ||||||| ||||||  |||||| |||||| ||||| | |||| || |||||| ||||| ||  ||||||||||| |||    
T  30067969 tatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacacacgtcggtatccgactcggcacctacgattatactgaattatgtcattttc 30068068  T
Q  560 tcaaattattatcc 573  Q
    ||||||||||||||    
T  30068069 tcaaattattatcc 30068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 571
Target Start/End: Complemental strand, 13845291 - 13845241
Alignment:
Q  521 gacacgacacctatgattacaccaaattatgtcatattctcaaattattat 571  Q
    |||||||||||||||||||| | ||||||| |||| |||||||||||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 594
Target Start/End: Complemental strand, 40064009 - 40063935
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgtcgtgt 594  Q
    ||||||||| ||||||||||||   ||||||||||| |||||||||||||||   || ||||||| |||||||||    
T  40064009 cgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcggtgtccgtgtcgtgt 40063935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 531
Target Start/End: Complemental strand, 44067644 - 44067574
Alignment:
Q  461 atgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacc 531  Q
    |||||||||  ||| |||||  ||||||||||||||||||||| |||| |||| |||| ||||||||||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacacc 44067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 584
Target Start/End: Original strand, 13009494 - 13009558
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtc 584  Q
    ||||||||||| ||||||||||| ||||||| |  | ||||||||||||||||| || |||||||    
T  13009494 cgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcggtgtc 13009558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 508
Target Start/End: Original strand, 36450695 - 36450743
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacac 508  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||| ||||    
T  36450695 tatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacac 36450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 526 - 589
Target Start/End: Complemental strand, 3025603 - 3025540
Alignment:
Q  526 gacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgt 589  Q
    ||||||||| |||||||  |||||||| || |||||||||||||| | ||||||||||| ||||    
T  3025603 gacacctataattacactgaattatgtgattttctcaaattattagcaatgccggtgtccgtgt 3025540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 571
Target Start/End: Original strand, 28883880 - 28883930
Alignment:
Q  521 gacacgacacctatgattacaccaaattatgtcatattctcaaattattat 571  Q
    |||| ||||||||||||| |||  ||||||||||| |||||||||||||||    
T  28883880 gacaagacacctatgattccactgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 44067574 - 44067521
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||||||| ||| |||||||   |||||||||| |||||||||||||||||    
T  44067574 cgacacgacacttataattacactgtattatgtcattttctcaaattattatcc 44067521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 572
Target Start/End: Original strand, 18513176 - 18513294
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacac------gacacctatgattacaccaaattatgtc 553  Q
    ||||||||||  ||| |||||||||||||||||||||||||||| |||||| ||||||| ||||||      ||||| ||||||||||   |||||||||    
T  18513176 tatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgacacaacactgacacatatgattacattgaattatgtc 18513275  T
Q  554 atattctcaaattattatc 572  Q
    || ||||||||||||||||    
T  18513276 attttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 460 - 571
Target Start/End: Original strand, 31243477 - 31243600
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacac------------gacacctatgattacaccaaat 547  Q
    |||||| |||||||| |||||| |||||| ||||||||||||||||||| ||||||||| ||||||            |||||||||||||||||  |||    
T  31243477 tatgaaccacaaacactcctcatattaggtgtgtcctggtgtcgaacacgcatcggtgtccgacaccaacaccgacatgacacctatgattacactgaat 31243576  T
Q  548 tatgtcatattctcaaattattat 571  Q
    |||||||| |||||||||||||||    
T  31243577 tatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 592
Target Start/End: Original strand, 47191001 - 47191066
Alignment:
Q  527 acacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgtcgt 592  Q
    ||||||| |||||||| |||||||||||| ||| |||||||||||||||| ||||||| |||||||    
T  47191001 acacctaggattacactaaattatgtcattttcgcaaattattatccatgtcggtgtccgtgtcgt 47191066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 573
Target Start/End: Complemental strand, 24343631 - 24343512
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgtt------cgacacgacacctatgattacaccaaattatgtc 553  Q
    ||||||||||  ||| |||||||| ||||||||||| ||||||| |||| | |||||||       ||||||||||||||| |||||||  ||||||||     
T  24343631 tatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgta 24343532  T
Q  554 atattctcaaattattatcc 573  Q
    || |||||||||||||||||    
T  24343531 attttctcaaattattatcc 24343512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 3144653 - 3144706
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||    
T  3144653 cgacacgacacctatgattacactaaattatatcattttctgaaattattatcc 3144706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 20743279 - 20743332
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    |||||| ||||||||||||||||  ||||||||||| |||||||||||||||||    
T  20743279 cgacacaacacctatgattacactgaattatgtcattttctcaaattattatcc 20743332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 571
Target Start/End: Original strand, 12895215 - 12895326
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgaca-cgacacctatgattacaccaaattatgtcatatt 558  Q
    |||||||||| |||| ||||| |||||||||||||| | ||||| | |||  || |||| ||||| |||||| ||| ||||||| ||||||||| || ||    
T  12895215 tatgaagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtc-gtgtccgacaccgacacttataattacacaaaattatgtgatttt 12895313  T
Q  559 ctcaaattattat 571  Q
     ||||||||||||    
T  12895314 ttcaaattattat 12895326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 508
Target Start/End: Original strand, 34306745 - 34306793
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacac 508  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| ||||    
T  34306745 tatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacac 34306793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 573
Target Start/End: Original strand, 39507060 - 39507173
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattc 559  Q
    |||||||||  |||| ||||| || |||| |||||  ||||||| ||||  ||| |||| |||||  ||||||||||||||||  |||||| |||| |||    
T  39507060 tatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacataacacctatgattacacttaattatatcattttc 39507159  T
Q  560 tcaaattattatcc 573  Q
      ||||||||||||    
T  39507160 ataaattattatcc 39507173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 508
Target Start/End: Complemental strand, 10133827 - 10133779
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacac 508  Q
    |||||||||  ||| |||||||||||||| |||||||||||||| ||||    
T  10133827 tatgaagcatgaacgttcctcagattaggtgtgtcctggtgtcggacac 10133779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 569
Target Start/End: Complemental strand, 11110256 - 11110212
Alignment:
Q  525 cgacacctatgattacaccaaattatgtcatattctcaaattatt 569  Q
    |||||| |||||||||| | ||||||||||| |||||||||||||    
T  11110256 cgacacatatgattacatcgaattatgtcattttctcaaattatt 11110212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 508
Target Start/End: Complemental strand, 40965389 - 40965341
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacac 508  Q
    ||||||||||  ||| ||||||||||||||||||| |||||||| ||||    
T  40965389 tatgaagcaccgacactcctcagattaggcgtgtcttggtgtcggacac 40965341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 569
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  529 acctatgattacaccaaattatgtcatattctcaaattatt 569  Q
    |||||||||||||| ||||||| |||| |||||||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 482 - 573
Target Start/End: Original strand, 12235482 - 12235573
Alignment:
Q  482 gattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||| |||||| |||| || |||||| |||||||  ||||||||||||||||||||||  ||||||||||| ||||| |||||||||||    
T  12235482 gattaggggtgtcccggtgccggacacacgtcggtgtcggacacgacacctatgattacactgaattatgtcattttctctaattattatcc 12235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 570
Target Start/End: Original strand, 26178620 - 26178732
Alignment:
Q  461 atgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgaca---cgacacctatgattacaccaaattatgtcatat 557  Q
    |||||||||| ||| ||||| |||||||||||||| |||||| ||||||||||| ||| | |||   |||||| ||||||||||| ||||||||| || |    
T  26178620 atgaagcacagacactcctccgattaggcgtgtcccggtgtcaaacacacatcgatgtccaacacaccgacacatatgattacactaaattatgtgattt 26178719  T
Q  558 tctcaaattatta 570  Q
    | |||||||||||    
T  26178720 tatcaaattatta 26178732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 6389801 - 6389748
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  6389801 cgacacgacacctatgattacactaaattatatcattttctcaaattattatcc 6389748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 34446623 - 34446570
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  34446623 cgacacgacacctatgattacactgaattatgtcattttctcaaattattatcc 34446570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 17168464 - 17168516
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||    
T  17168464 cgacacgacacctattattacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 12086346 - 12086399
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    |||||||||||||||||||| ||  |||||||||||  ||||||||||||||||    
T  12086346 cgacacgacacctatgattaaactgaattatgtcattatctcaaattattatcc 12086399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 503
Target Start/End: Complemental strand, 3209517 - 3209474
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcg 503  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||    
T  3209517 tatgaagcacaaacactcctcggattaggcgtgtccgggtgtcg 3209474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 499
Target Start/End: Original strand, 17341622 - 17341661
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggt 499  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  17341622 tatgaagcacaaacactcctcggattaggcgtgtcctggt 17341661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 570
Target Start/End: Original strand, 30781295 - 30781345
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattatta 570  Q
    ||||| ||||||||||||||||   ||||||||||| ||||||||||||||    
T  30781295 cgacatgacacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 576
Target Start/End: Complemental strand, 6299567 - 6299514
Alignment:
Q  523 cacgacacctatgattacaccaaattatgtcatattctcaaattattatccatg 576  Q
    |||||||||||| ||||||   |||||| |||| ||||||||||||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatg 6299514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 576
Target Start/End: Complemental strand, 6306377 - 6306324
Alignment:
Q  523 cacgacacctatgattacaccaaattatgtcatattctcaaattattatccatg 576  Q
    |||||||||||| ||||||   |||||| |||| ||||||||||||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatg 6306324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 570
Target Start/End: Original strand, 9195760 - 9195805
Alignment:
Q  525 cgacacctatgattacaccaaattatgtcatattctcaaattatta 570  Q
    |||||| ||| ||||||| |||||||||||| ||||||||||||||    
T  9195760 cgacacatataattacactaaattatgtcattttctcaaattatta 9195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 594
Target Start/End: Original strand, 13689179 - 13689268
Alignment:
Q  505 acacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgtcgtgt 594  Q
    |||||| || |||| |||||||| |||||||||||||   || | ||| || ||||||||||||||||  || |||||||| ||||||||    
T  13689179 acacacgtcagtgtccgacacgatacctatgattacattgaaatttgttattttctcaaattattatctgtgtcggtgtctatgtcgtgt 13689268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 26247484 - 26247431
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    |||||||| ||||||||||| || ||| |||||||| |||| ||||||||||||    
T  26247484 cgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatcc 26247431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 567
Target Start/End: Original strand, 7752137 - 7752189
Alignment:
Q  515 gtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaatta 567  Q
    |||||||||||||||||||| ||| ||  |||||||||||| |||| ||||||    
T  7752137 gtgttcgacacgacacctataattgcattaaattatgtcattttcttaaatta 7752189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 19602182 - 19602234
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    |||||| | ||||||||||||||  |||||| |||| ||||||||||||||||    
T  19602182 cgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 460 - 573
Target Start/End: Complemental strand, 23752017 - 23751905
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattc 559  Q
    ||||||||||| ||| |  || |||||||||||||| | ||||  |||| | ||||||| ||||||||||||||||||||||| ||||||| |||| ||     
T  23752017 tatgaagcacagacacttatcggattaggcgtgtcccg-tgtctgacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatttta 23751919  T
Q  560 tcaaattattatcc 573  Q
    ||||||||||||||    
T  23751918 tcaaattattatcc 23751905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 520 - 594
Target Start/End: Original strand, 29812665 - 29812739
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgtcgtgt 594  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |  | ||||||| |||||||||    
T  29812665 cgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcggtgtccgtgtcgtgt 29812739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 522 - 590
Target Start/End: Original strand, 22683758 - 22683826
Alignment:
Q  522 acacgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgtc 590  Q
    ||||||||||||||||| |||  |||||| |||||||||||||||||||||| |  ||||||| |||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcggtgtcggtgtc 22683826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 573
Target Start/End: Original strand, 38804490 - 38804609
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcg------acacgacacctatgattacaccaaattatgtc 553  Q
    ||||||||||| ||| ||||| |||||||| ||||| || |||| |||||| ||||||| ||      ||||||||||||||||||| |   ||||||||    
T  38804490 tatgaagcacatacactcctcggattaggcatgtcccggcgtcggacacacgtcggtgtccgacaccaacacgacacctatgattaccctggattatgtc 38804589  T
Q  554 atattctcaaattattatcc 573  Q
    || |||| ||||||||||||    
T  38804590 attttctgaaattattatcc 38804609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 572
Target Start/End: Complemental strand, 12278931 - 12278841
Alignment:
Q  482 gattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||| |||||| ||||||  |||| | | ||||| ||||||||||| ||| |||||||  ||||||||||| |||| |||||||||||    
T  12278931 gattaggtgtgtcccggtgtcagacacgcgttggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattattatc 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 23930277 - 23930224
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    |||||| ||||||||||||||||  ||||||||||| ||||||||||| |||||    
T  23930277 cgacacaacacctatgattacactgaattatgtcattttctcaaattactatcc 23930224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 576
Target Start/End: Original strand, 17780085 - 17780141
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatg 576  Q
    ||||||||||||||| ||||||   ||||||||||| |||| |||||||||||||||    
T  17780085 cgacacgacacctattattacatagaattatgtcattttcttaaattattatccatg 17780141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 573
Target Start/End: Original strand, 4017797 - 4017848
Alignment:
Q  522 acacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||||| ||||||||||| ||||||| || | |||||||||||||||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatcc 4017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 568
Target Start/End: Original strand, 7133229 - 7133327
Alignment:
Q  476 tcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacac-gacac-----ctatgattacaccaaattatgtcatattctcaaattat 568  Q
    ||||||||||||| ||||||  |||||| |||| | ||||||| |||||| |||||     ||||||||||||  ||||||||||| ||||||||||||    
T  7133229 tcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 24105796 - 24105747
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacaca 509  Q
    ||||||||||||||| ||||| | |||||||||||| ||||||| |||||    
T  24105796 tatgaagcacaaacactcctcgggttaggcgtgtcccggtgtcggacaca 24105747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 43250051 - 43249998
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||||||| ||| |||||||   |||||||||| |||||||||||||||||    
T  43250051 cgacacgacacttataattacactgtattatgtcattttctcaaattattatcc 43249998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 3457939 - 3457987
Alignment:
Q  276 ctagaatgacattaagttg-taatattgaggatgaatttgaaattaagt 323  Q
    ||||||||| ||||||||| |||||| || |||||||||||||||||||    
T  3457939 ctagaatgatattaagttggtaatatcgaagatgaatttgaaattaagt 3457987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 29841942 - 29841882
Alignment:
Q  263 gtatttttaaggtctagaatgacattaagttgtaatattgaggatgaatttgaaattaagt 323  Q
    |||||| || || |||||||||||||||||||  | || | ||||||||||||||||||||    
T  29841942 gtatttgtagggactagaatgacattaagttgataaatcggggatgaatttgaaattaagt 29841882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 512 - 573
Target Start/End: Complemental strand, 2015 - 1954
Alignment:
Q  512 tcggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||    
T  2015 tcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatcc 1954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 572
Target Start/End: Original strand, 2577120 - 2577233
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacac-gacacctatgattacaccaaattatgtcatatt 558  Q
    |||||| |||| ||| ||| || |||||| | ||| |||||||| |||||||||||| | |||||| |  || ||||||||||| |||||||||||| ||    
T  2577120 tatgaaacacagacactccacaaattaggtgagtcttggtgtcggacacacatcggtatccgacaccggaacatatgattacactaaattatgtcatttt 2577219  T
Q  559 ctcaaattattatc 572  Q
    ||||||||||||||    
T  2577220 ctcaaattattatc 2577233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 461 - 573
Target Start/End: Original strand, 7997108 - 7997220
Alignment:
Q  461 atgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattct 560  Q
    |||||||||||||| | |||  |||||| |||||||| ||||| |||| | || |||| ||||||||||| ||| |||||||   ||||| |||| ||||    
T  7997108 atgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatatcattttct 7997207  T
Q  561 caaattattatcc 573  Q
    |||||||||||||    
T  7997208 caaattattatcc 7997220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 43554579 - 43554528
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattat 571  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||||||    
T  43554579 cgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 521 - 583
Target Start/End: Original strand, 18607099 - 18607161
Alignment:
Q  521 gacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgt 583  Q
    |||||||||||||||||||||   |||||||| || |||||||||||||||||||| ||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcggtgt 18607161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 572
Target Start/End: Original strand, 19737422 - 19737535
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgaca-cgacacctatgattacaccaaattatgtcatatt 558  Q
    ||||||||||||||| ||||||||||||  ||||| |||||||| | |||||| |||||   ||| |||||| ||||||| ||   |||||||| || ||    
T  19737422 tatgaagcacaaacactcctcagattagatgtgtcttggtgtcggatacacattggtgtcaaacaccgacacatatgattgcattgaattatgtaatttt 19737521  T
Q  559 ctcaaattattatc 572  Q
    ||||||||||||||    
T  19737522 ctcaaattattatc 19737535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 39696000 - 39696049
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattatt 569  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  39696000 cgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 521 - 570
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  521 gacacgacacctatgattacaccaaattatgtcatattctcaaattatta 570  Q
    |||||||||| |||||||||||  ||||||||||| ||||||||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 573
Target Start/End: Complemental strand, 42469270 - 42469226
Alignment:
Q  529 acctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    |||||||||||||| ||| |||||||| |||||||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatcc 42469226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 495
Target Start/End: Original strand, 13287350 - 13287389
Alignment:
Q  456 aatgtatgaagcacaaacattcctcagattaggcgtgtcc 495  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  13287350 aatgtatgaagcacatacactcctcagattaggcgtgtcc 13287389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 564
Target Start/End: Original strand, 26205763 - 26205805
Alignment:
Q  522 acacgacacctatgattacaccaaattatgtcatattctcaaa 564  Q
    |||||||||||||||||||||  ||||||||||| ||||||||    
T  26205763 acacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 27932353 - 27932311
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtc 502  Q
    ||||||||||||||| |||||  ||||||||||||||||||||    
T  27932353 tatgaagcacaaacactcctcgaattaggcgtgtcctggtgtc 27932311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 37472597 - 37472650
Alignment:
Q  519 tcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    |||||||||||| |||||||| | | ||||||||||| ||||| ||||||||||    
T  37472597 tcgacacgacacatatgattatatcgaattatgtcattttctcgaattattatc 37472650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 508
Target Start/End: Complemental strand, 2437029 - 2436981
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacac 508  Q
    |||||||||| |||| ||||| ||||||||||||| |||||||| ||||    
T  2437029 tatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacac 2436981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 5467979 - 5468031
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||||||||||| |||||||  |||||||| || || |||||||||||||    
T  5467979 cgacacgacacctataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 14731866 - 14731910
Alignment:
Q  164 ttgaaattgtaagattgtaacaatttagtccctcgcattatcgat 208  Q
    ||||||||||||||||||  |||||||||||||  ||||||||||    
T  14731866 ttgaaattgtaagattgtgtcaatttagtcccttacattatcgat 14731910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 42004948 - 42005001
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||||||||||    
T  42004948 cgacacaacacctatgattacactaaattatgtcattttctcaaattattatcc 42005001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 482 - 570
Target Start/End: Original strand, 30847682 - 30847771
Alignment:
Q  482 gattaggcgtgtcctggtgtcgaacacacatcggtgttcgacac-gacacctatgattacaccaaattatgtcatattctcaaattatta 570  Q
    ||||||| |||| || |||||| |||||||||||||||| |||| ||||| ||||||||||   ||||||||||| || |||||||||||    
T  30847682 gattaggtgtgttctagtgtcggacacacatcggtgttcaacactgacacatatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 521 - 573
Target Start/End: Original strand, 6936402 - 6936454
Alignment:
Q  521 gacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||||||||||||||||||  ||||||||||| |||||| ||||||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatcc 6936454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 590
Target Start/End: Original strand, 40747780 - 40747844
Alignment:
Q  526 gacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgtc 590  Q
    ||||||||| ||||||   ||||||||||| ||||||||||||||||| || |||||||||||||    
T  40747780 gacacctataattacattgaattatgtcattttctcaaattattatccgtgtcggtgtctgtgtc 40747844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 12241346 - 12241432
Alignment:
Q  163 attgaaattgtaagattgtaacaatttagtccctcgcattatcgattattttaaaatgattctt-aaatctcaaaatgttaatcaaat 249  Q
    |||||||||||| |  |||| |||| ||||||||| ||||||||| |||||||||||||||||| ||||  |||||| ||||||||||    
T  12241346 attgaaattgtagggctgtatcaatgtagtccctcacattatcga-tattttaaaatgattcttgaaattgcaaaattttaatcaaat 12241432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 570
Target Start/End: Original strand, 38075926 - 38076021
Alignment:
Q  476 tcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgaca-cgacacctatgattacaccaaattatgtcatattctcaaattatta 570  Q
    |||||| ||||||||||||| |||||||  ||||||||| ||| ||||| |||||| |||||||||||  | |||||| || | ||||||||||||    
T  38075926 tcctcaaattaggcgtgtcccggtgtcggtcacacatcgatgtccgacaccgacacatatgattacactgacttatgtgatttactcaaattatta 38076021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 594
Target Start/End: Original strand, 39101187 - 39101257
Alignment:
Q  524 acgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgtcgtgt 594  Q
    ||||||||||| |||||||  |||||||| || |||||||||||||||   || |||||||||||||||||    
T  39101187 acgacacctataattacacttaattatgttattttctcaaattattatatgtgtcggtgtctgtgtcgtgt 39101257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 584
Target Start/End: Complemental strand, 6574048 - 6573983
Alignment:
Q  519 tcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtc 584  Q
    ||||||| |||||||||||||||| ||||||| ||||  ||||||||||| |||| || |||||||    
T  6574048 tcgacacaacacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcggtgtc 6573983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 573
Target Start/End: Original strand, 11634127 - 11634178
Alignment:
Q  522 acacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    ||||||||||||||||||||  |||||||||  | |||||||||||||||||    
T  11634127 acacgacacctatgattacattaaattatgttgttttctcaaattattatcc 11634178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 373114 - 373053
Alignment:
Q  512 tcggtgttcgacac-gacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||||| |||| ||||| |||||||| || |||| ||||||| ||||||||||||||||    
T  373114 tcggtgttcaacaccgacacatatgattaaactaaatcatgtcattttctcaaattattatc 373053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 509
Target Start/End: Original strand, 9630562 - 9630611
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacaca 509  Q
    |||||||||| |||| ||||| ||||||||||||||| |||| |||||||    
T  9630562 tatgaagcacgaacactcctcggattaggcgtgtcctcgtgttgaacaca 9630611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 16297223 - 16297272
Alignment:
Q  461 atgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacac 510  Q
    |||||||||  ||| ||||| |||||||||||||||||||||| ||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacacac 16297272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 573
Target Start/End: Original strand, 22794019 - 22794132
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacctatgattacaccaaattatgtcatattc 559  Q
    ||||||||||  ||| |||||  |||||| |||||| || |||| |||  | || ||||  |||||||||||||| |||||||   |||||||||| ||     
T  22794019 tatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtcggacacgacacctataattacactgtattatgtcattttt 22794118  T
Q  560 tcaaattattatcc 573  Q
    ||||||||||||||    
T  22794119 tcaaattattatcc 22794132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 508
Target Start/End: Complemental strand, 2218346 - 2218298
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacac 508  Q
    ||||||||||  ||| ||||||||||||||||||||| |||||| ||||    
T  2218346 tatgaagcacggacactcctcagattaggcgtgtcctagtgtcggacac 2218298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 23354653 - 23354705
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  23354653 cgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 24011094 - 24011042
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  24011094 cgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 576
Target Start/End: Complemental strand, 12748749 - 12748686
Alignment:
Q  513 cggtgttcgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatg 576  Q
    |||||| |||||| ||||||||||||||||  || |||||||| ||||||||||||||||||||    
T  12748749 cggtgtccgacacaacacctatgattacactgaactatgtcattttctcaaattattatccatg 12748686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 479 - 572
Target Start/End: Complemental strand, 18571071 - 18570978
Alignment:
Q  479 tcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacac-gacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||||||||||||||||||||| | |   |||| |||||||||| ||||| ||||||||||   ||||||||||| ||||||||||||||||    
T  18571071 tcagattaggcgtgtcctggtgtcggatatgtatcg-tgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 520 - 590
Target Start/End: Complemental strand, 25544539 - 25544469
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatccatgccggtgtctgtgtc 590  Q
    |||||||||||||||||||||||  |||||| |||| ||||||||||||||| | || ||||||| |||||    
T  25544539 cgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcggtgtcggtgtc 25544469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 522 - 572
Target Start/End: Original strand, 10535762 - 10535812
Alignment:
Q  522 acacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatc 10535812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 512
Target Start/End: Original strand, 10535686 - 10535738
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacat 512  Q
    |||||||||| |||| ||||| |||||||||||||||||||||  ||||||||    
T  10535686 tatgaagcacgaacactcctcggattaggcgtgtcctggtgtcagacacacat 10535738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 568
Target Start/End: Original strand, 11308005 - 11308053
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattat 568  Q
    |||||||||||||||||||||||  ||||||||||| || |||||||||    
T  11308005 cgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 23354996 - 23355048
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||| ||||||||||||| ||| ||||||| |||| ||||||||||||||||    
T  23354996 cgacatgacacctatgattgcactaaattatatcattttctcaaattattatc 23355048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 572
Target Start/End: Original strand, 34006997 - 34007044
Alignment:
Q  525 cgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  34006997 cgacacctatgattacactgaattatgtcaatttctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 572
Target Start/End: Complemental strand, 38919262 - 38919212
Alignment:
Q  522 acacgacacctatgattacaccaaattatgtcatattctcaaattattatc 572  Q
    ||||||||||||||||||||| ||| |||  ||| ||||||||||||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatc 38919212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 509
Target Start/End: Original strand, 29367284 - 29367333
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacaca 509  Q
    ||||||||||||||||||||| |||||||| ||||  ||||||| |||||    
T  29367284 tatgaagcacaaacattcctcggattaggcatgtctcggtgtcggacaca 29367333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 531
Target Start/End: Original strand, 225199 - 225269
Alignment:
Q  461 atgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgacacc 531  Q
    |||||||||  ||| |||||  |||||||||||||||||||||||||| | || |||| ||||||||||||    
T  225199 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcgaacacgcgtcagtgtccgacacgacacc 225269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 8054 - 8107
Alignment:
Q  520 cgacacgacacctatgattacaccaaattatgtcatattctcaaattattatcc 573  Q
    |||||||| ||||||| ||||||  ||||||||||| |||||||||||||||||    
T  8054 cgacacgatacctatgtttacactgaattatgtcattttctcaaattattatcc 8107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 508
Target Start/End: Original strand, 135264 - 135312
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacac 508  Q
    |||||||||| ||||  ||||||||||||||||||||||||||| ||||    
T  135264 tatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggacac 135312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 529
Target Start/End: Original strand, 236915 - 236984
Alignment:
Q  460 tatgaagcacaaacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgttcgacacgaca 529  Q
    ||||||||||| ||| ||||||||||||| |||||| ||||||  |||| |||| ||||  |||||||||    
T  236915 tatgaagcacagacactcctcagattaggtgtgtcccggtgtcagacacgcatccgtgtatgacacgaca 236984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University