View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3612_low_4 (Length: 454)
Name: NF3612_low_4
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3612_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 27334647 - 27335076
Alignment:
| Q |
16 |
aatatgctagaaaacatcatgacatttcaactttgagtcttgtattgacattttgatttggcatatgctaaacttttgggccatccattgtagctcattt |
115 |
Q |
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| T |
27334647 |
aatatgctagaaaacatcatgacctttcaactttgagacttgtattgacattttgatttggcatatgctaaacttttgggccatccattgtagctcattt |
27334746 |
T |
|
| Q |
116 |
gagtagatattatgaactatgctggtaacgatagtaaaattatctacccgctgttatcaaatcttgtggaccaaatgagggagaatccagaatattttgt |
215 |
Q |
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| T |
27334747 |
gagtagatattatgaactatgctggtaacgatagtaaaattatctacccgctgttatcaaatcttgtggaccaaatgagggagaatccagaatattttgt |
27334846 |
T |
|
| Q |
216 |
tgcttaatttgcttatccatttatttactcccatcctcatccatttggtcattcatgtgagcttttggttgataagttttcgaaatattgaaaaggaaag |
315 |
Q |
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| T |
27334847 |
tgcttaatttgcttatccatttatttactcccatcctcgtccatttggtcattcatgtgagcttttggttgataagttttcgaaatattgaaaaggaaag |
27334946 |
T |
|
| Q |
316 |
tataagcttttgtagattttcttcattaaaacttaattttcaatctagatttagaatagaaactgtgaagcttcaggtcctgccttggtgaaaaatacaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27334947 |
tataagcttttgtagattttcttcattaaaacttaattttcaatctaga-ttagaatagaaactgtgaagcttcaggtcctgccttggtgaaaaatacaa |
27335045 |
T |
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| Q |
416 |
taaattttgctaaccttttttagttcatctc |
446 |
Q |
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| T |
27335046 |
taaattttgctaaccttttctagttcatctc |
27335076 |
T |
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