View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3612_low_8 (Length: 347)
Name: NF3612_low_8
Description: NF3612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3612_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 47969600 - 47969280
Alignment:
| Q |
11 |
caaaggcaagtgaagtagttccaatgagtttgtatctaaggggaagattcttccatgatggccaattcccagacaagtgttgttcaagttcaacatcatc |
110 |
Q |
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| T |
47969600 |
caaaggcaagtgaagtagttccaatgagtttgtatctaaggggaagattcttccatgatggccaattgccagacaagtgttgttcaagttcaacatcatc |
47969501 |
T |
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| Q |
111 |
atcgaggtcggagagagcattgattttggtcttggacagtttattatgggtttctttgatatcttgttgagtattactacatgaaactactgttctttgt |
210 |
Q |
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| T |
47969500 |
gtcgaggtcggagagagcattgattttggtcttggacagtttattatgggtttctttgatatcttgttgagtattactacatgaaactactgttctttgt |
47969401 |
T |
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| Q |
211 |
ttggttctgtggatgagtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgtgaatttattctttgattctgag |
310 |
Q |
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| T |
47969400 |
ttggttctgtggatgagtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgtgaatttgttatttgattctgag |
47969301 |
T |
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| Q |
311 |
tttgaggttgagtaaagaaac |
331 |
Q |
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| T |
47969300 |
tttgaggttgagtaaagaaac |
47969280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 8375672 - 8375736
Alignment:
| Q |
226 |
agtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgtga |
290 |
Q |
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| T |
8375672 |
agtttggaaggtgtgaagtggaagtgaaagtgttgaaaacaagttttgatagaaggaatgtgtga |
8375736 |
T |
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