View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3613_high_1 (Length: 600)
Name: NF3613_high_1
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 366 - 583
Target Start/End: Complemental strand, 41873268 - 41873051
Alignment:
| Q |
366 |
tgtcactaggttatcagcaaaaatgtcatcacaaagaacgctatagtaaatttaaattcttaccgaaattgcttgctatgtggcaacacctgcttcttct |
465 |
Q |
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| T |
41873268 |
tgtcactaggttatcagcaaaaatgtcatcacaaagaacgctatagtaaatttaaattcttaccgaaattgcttgctatgtggcaacacctgcttcttct |
41873169 |
T |
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| Q |
466 |
tcctcaacatttcatcttcaatatcatcaacattaaacaacaacgaggaatcatatggcagttccatgttcctcttcctccaagcagccacataaaccac |
565 |
Q |
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| T |
41873168 |
tcctcaacatttcatcttcaatatcatcaacattaaacaacaacgaggaatcatatggcagttccatgttcctcttcctccaagcagccacataaaccac |
41873069 |
T |
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| Q |
566 |
tgcaatctgagtcaaagg |
583 |
Q |
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| T |
41873068 |
tgcaatctgagtcaaagg |
41873051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 41873872 - 41873716
Alignment:
| Q |
9 |
gagaagaatttagatcaactttgtagaaaagaatcttttgattgcccaattaagtatttaacctatacctggaagtaagaacaaaatagtattattttat |
108 |
Q |
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| T |
41873872 |
gagaagaatttagatcaactttgtagaaaagaatcttttgattgcccaattaagtatttaacctatacctggaagtaagaacaaaatagtattattttat |
41873773 |
T |
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| Q |
109 |
ttttaaatgaaatttcatctgaat-cttattaaataacttgagttagtgattctatc |
164 |
Q |
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| T |
41873772 |
ttttaaatgaaatttcatgcgaatccttattaaataacttgagttagtgattctatc |
41873716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 41873458 - 41873351
Alignment:
| Q |
172 |
attgatactacaaaacgatatactacatgtcaaaaaacaatttacttgctaaataatttatattatgggaccgaagaacatcaaataagtgaatttgact |
271 |
Q |
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| T |
41873458 |
attgatactacaaaacgacatactacatgtcaaaaaacaatttacttgctaaatcatttatattatgggaccgaagaacatcaaataagtgaatttgact |
41873359 |
T |
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| Q |
272 |
ccaactag |
279 |
Q |
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| T |
41873358 |
ccaactag |
41873351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 583
Target Start/End: Original strand, 3658391 - 3658437
Alignment:
| Q |
537 |
ctcttcctccaagcagccacataaaccactgcaatctgagtcaaagg |
583 |
Q |
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| T |
3658391 |
ctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaagg |
3658437 |
T |
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