View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3613_high_10 (Length: 301)

Name: NF3613_high_10
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3613_high_10
NF3613_high_10
[»] chr3 (1 HSPs)
chr3 (1-290)||(41056238-41056527)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 41056527 - 41056238
Alignment:
Q  1 cgaaccttgtttggtacgagtactttcttctagtattgagtttgagatgaaaactcggtttggaaacagagcatgattgggagagtgagagtgagaatcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41056527 cgaaccttgtttggtacgagtactttcttctagtattgagtttgagatgaaaactcggtttggaaacagagcatgattgggagagtgagagtgagaatcc 41056428  T
Q  101 agaagaggcagtagaagataactgaacaaatggtgaccaaacagaagtcactctcaggcttagtgccataatgggttggaatggttaatccaataatatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41056427 agaagaggcagtagaagataactgaacaaatggtgaccaaacagaagtcactctcaggcttagtgccataatgggttggaatggttaatccaataatatt 41056328  T
Q  201 cacctccacctcaattttccagcatcatcttcttcgttagtcttattctgtttttctgctccaaaattacatttttagtcatttacctat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41056327 cacctccacctcaattttccagcatcatcttcttcgttagtcttattctgtttttctgctccaaaattacatttttagtcatttacctat 41056238  T

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