View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3613_high_15 (Length: 279)
Name: NF3613_high_15
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 45746201 - 45746443
Alignment:
| Q |
19 |
tatgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaagtcaatcttatattatcaatca |
118 |
Q |
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| T |
45746201 |
tatgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaagtcaatcttatattatcaatca |
45746300 |
T |
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| Q |
119 |
atcataatcgtcatttgtctaatgtnnnnnnnnnnnnnnnnttatatagannnnnnnggaggaggaaaaattatattgttaatcggtcattattgtcata |
218 |
Q |
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| T |
45746301 |
atcataatcgtcatttgtctaatgt-----aaaaaaaaaaattatatagatttttttggaggaggaaaaattatattgttaatcggtcattattgtcata |
45746395 |
T |
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| Q |
219 |
ttcaaaacgttagatttcaatcataactagttttgtgatttgttgatg |
266 |
Q |
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| T |
45746396 |
ttcaaaacgttagatttcaatcataactagttttgtgatttgttgatg |
45746443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 45734941 - 45735053
Alignment:
| Q |
19 |
tatgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaagtcaatcttatattatcaatca |
118 |
Q |
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| T |
45734941 |
tatgagatgacatttgcagaatcaagggaatgtgtccaatctgaaggcagtactgattcttttgcttttcctgtgtaagtcaatcttatattatcaatca |
45735040 |
T |
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| Q |
119 |
atcataatcgtca |
131 |
Q |
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| T |
45735041 |
atcctaatcgtca |
45735053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 45735104 - 45735180
Alignment:
| Q |
190 |
tatattgttaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgtgatttgttgatg |
266 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45735104 |
tatattattaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgggatttgttgatg |
45735180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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