View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3613_high_17 (Length: 256)
Name: NF3613_high_17
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_high_17 |
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| [»] scaffold1211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26377018 - 26376781
Alignment:
| Q |
1 |
tactttataatattttcaggaggtacgaggtgtgttggatgttattcaagttctggagcggaacagaataacaaagcagaagagaaaa-gaaagtgataa |
99 |
Q |
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| T |
26377018 |
tactttataatattttcaggaggtacgaggtgtgttggatgttattcaagttctggagcggaacagaataacaaagcagaagagaaaaagaaagcgataa |
26376919 |
T |
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| Q |
100 |
atgaaatacctcccgtcttcaagaataaggcatctcctgttcaactcagatattgcgtttgcagctgcatcttttgatctgaaaatagccaatgctctac |
199 |
Q |
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| T |
26376918 |
atgaaatacctcccgtcttcaagaataaggcatctcctgttcaactcagatattgcgtttgcacctgcatcttttgatctgaaaatagccaatgctctac |
26376819 |
T |
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| Q |
200 |
ctgtaggtggatgagcaaacaaaatcaattgatgatct |
237 |
Q |
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| T |
26376818 |
ctgtaggtggatgagcaaacaaaatcaattgatgatct |
26376781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 977 - 748
Alignment:
| Q |
2 |
actttataatattttcaggaggtacgaggtgtgttggatgttattcaagttctggagcggaacagaataacaaagcagaagagaaaag-aaagtgataaa |
100 |
Q |
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||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | |||||||||||||||| ||||||||||| |||| |||| |
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| T |
977 |
actttataatattttcaggaggtactgggtggattaaatgttatgcaagttctggaacagaacagaataacaaagtagaagagaaaaacaaagcagtaaa |
878 |
T |
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| Q |
101 |
tgaaatacctcccgtcttcaagaataaggcatctcctgttcaactcagatattgcgtttgcagctgcatcttttgatctgaaaatagccaatgctctacc |
200 |
Q |
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| T |
877 |
tgaaatacct-------tcaagaacaaggcatctgctggtcaactcagatattgcattttcagctgcatcttttgatctgaaaataaccaatgctctacc |
785 |
T |
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| Q |
201 |
tgtaggtggatgagcaaacaaaatcaattgatgatct |
237 |
Q |
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| T |
784 |
tgtcggtagatgagcaaacaaaatcagttgatgatct |
748 |
T |
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