View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3613_high_2 (Length: 494)

Name: NF3613_high_2
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3613_high_2
NF3613_high_2
[»] chr2 (1 HSPs)
chr2 (106-473)||(26377029-26377398)
[»] chr3 (2 HSPs)
chr3 (105-180)||(50063925-50064000)
chr3 (112-172)||(7227152-7227212)
[»] chr1 (2 HSPs)
chr1 (110-180)||(33966650-33966720)
chr1 (112-180)||(50204531-50204599)
[»] chr6 (2 HSPs)
chr6 (105-180)||(25101044-25101119)
chr6 (143-180)||(23890001-23890038)
[»] scaffold1211 (1 HSPs)
scaffold1211 (312-444)||(1020-1152)
[»] chr5 (1 HSPs)
chr5 (112-172)||(43281148-43281208)
[»] chr4 (1 HSPs)
chr4 (112-178)||(55911195-55911260)
[»] chr8 (1 HSPs)
chr8 (110-166)||(29168556-29168612)
[»] chr7 (1 HSPs)
chr7 (112-172)||(46082492-46082552)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 106 - 473
Target Start/End: Complemental strand, 26377398 - 26377029
Alignment:
Q  106 ggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatccttcctactattagaaacccaaaacaa 205  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26377398 ggaatgaagtcgaagcacggtggaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatccttcctactattagaaacccaaaacaa 26377299  T
Q  206 atctttttactctagtctaagaattgcattnnnnnnnnctactatagcccatgtgtcgtctgagacgtgtacaattgacaaccaatcattttgttcttgt 305  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  26377298 atctttttactctagtctaagaattgcattaaaaaaaactactatagcccatgtgtcgtcagagacgtgtacagttgacaaccaatcattttgttcttgt 26377199  T
Q  306 gcattcatttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaaccca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377198 gcattcatttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaaccca 26377099  T
Q  406 taagcatatgctgcacctttcatagttgcttaactataccacagcaaattgggac--agtgtccatattt 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  26377098 taagcatatgctgcacctttcatagttgcttaactataccacagcaaattgggacatagtgtccatattt 26377029  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 50064000 - 50063925
Alignment:
Q  105 cggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 180  Q
    |||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  50064000 cggagtgaagtcgaagctcggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcct 50063925  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 7227212 - 7227152
Alignment:
Q  112 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac 172  Q
    ||||||||||| ||| ||||||| |||| | |||||||||||  |||||| ||||||||||    
T  7227212 aagtcgaagcatggtcgaggtgctgtgggacgtagaatcgtacaatcctaagagccagcac 7227152  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 33966720 - 33966650
Alignment:
Q  110 tgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 180  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  33966720 tgaagtcaaagcacggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcct 33966650  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 50204599 - 50204531
Alignment:
Q  112 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 180  Q
    ||||||||||||| | ||||||| |||| | |||| ||| || |||||||||| ||||||| |||||||    
T  50204599 aagtcgaagcacgattgaggtgctgtggaacgtaggatcatacgatcctacgaaccagcactcgatcct 50204531  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 25101044 - 25101119
Alignment:
Q  105 cggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 180  Q
    |||| ||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||||||||| |||||||    
T  25101044 cggagtgaagtcgaagcacggttgaggtgccgtgggacatagaatcgtaagatcctacgagccagcactcgatcct 25101119  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 23890001 - 23890038
Alignment:
Q  143 gtagaatcgtaagatcctacgagccagcacacgatcct 180  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  23890001 gtagaatcgtacgatcctacgagccagcactcgatcct 23890038  T

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Target: scaffold1211 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold1211
Description:

Target: scaffold1211; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 312 - 444
Target Start/End: Complemental strand, 1152 - 1020
Alignment:
Q  312 atttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaacccataagca 411  Q
    ||||||| ||| |||||  |||| ||||| ||| ||||| ||||||||||||| ||||||||||| ||  ||||||| | |||||||||| || ||||||    
T  1152 atttatcaacagtctttgcagtcagatttgctagtctaaaatctagtctctaccatcaataagtttaagaaactttcaaatacaatacaaaccgtaagca 1053  T
Q  412 tatgctgcacctttcatagttgcttaactatac 444  Q
    ||||  | ||||||||| ||||| |||||||||    
T  1052 tatgtggaacctttcatggttgcataactatac 1020  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 43281148 - 43281208
Alignment:
Q  112 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac 172  Q
    ||||||||||| | | |||||||||||| ||||||||||||| ||||||| || |||||||    
T  43281148 aagtcgaagcatgattgaggtgccgtgggatgtagaatcgtacgatcctatgaaccagcac 43281208  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 55911260 - 55911195
Alignment:
Q  112 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatc 178  Q
    ||||| ||||||| | |||||||||||| |||||| |||||| |||||||||| ||||||| |||||    
T  55911260 aagtcaaagcacgattgaggtgccgtgg-atgtaggatcgtatgatcctacgaaccagcactcgatc 55911195  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 29168556 - 29168612
Alignment:
Q  110 tgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagc 166  Q
    ||||||||||||||||| ||||||| |||||| |||  |||||  ||||||||||||    
T  29168556 tgaagtcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgagc 29168612  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 46082492 - 46082552
Alignment:
Q  112 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac 172  Q
    ||||||||||||||| ||||||| | || |  |||||||||| ||||||| ||||||||||    
T  46082492 aagtcgaagcacggttgaggtgcggagggacatagaatcgtacgatcctatgagccagcac 46082552  T

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