View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3613_high_20 (Length: 249)
Name: NF3613_high_20
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40576881 - 40577119
Alignment:
| Q |
1 |
agtcttttgcaccgccttaacttggtcaacttagtagaattatggatagcaagtttggtgatagttaaaaacacaattgtactagttatgctatatgaca |
100 |
Q |
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| T |
40576881 |
agtcttttgcaccaccttaacttg-tcaacttagtagaattatagatagcaagtttggtgatagttaaaaacacaattgtactagttatgctatatgaca |
40576979 |
T |
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| Q |
101 |
agaatgttaaaaatgaagcattaacttttataatcctaatgttggaaaaaagatgtaacattaagctacattgagacaaaaatctctcctttgcccggtg |
200 |
Q |
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| T |
40576980 |
agaatgttaaaaatgaagcattaacttttataatcctattgttggaaaaaagatgtaacattaagctacattgagacaaaaatctctcctttgcccggtg |
40577079 |
T |
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| Q |
201 |
gccgttggccacagtttttggattaattgtcatctctctg |
240 |
Q |
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| T |
40577080 |
gccgttggccacagtttttggattaattgtcatctctctg |
40577119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27472510 - 27472575
Alignment:
| Q |
1 |
agtcttttgcaccgccttaacttggtcaacttagtagaattatggatagcaagtttggtgatagtta |
67 |
Q |
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| T |
27472510 |
agtcttttgcaactccttaacttg-tcaacttagtagaactatagatagcaagtttggtcatagtta |
27472575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 27472570 - 27472614
Alignment:
| Q |
83 |
tagttatgctatatgacaagaatgttaaaaatgaagcattaactt |
127 |
Q |
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| T |
27472570 |
tagttatcctatatgacaagaatgttaaaattgaagcattaactt |
27472614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 62 - 239
Target Start/End: Complemental strand, 22686742 - 22686565
Alignment:
| Q |
62 |
tagttaaaaacacaattgtactagttatgctatatgacaagaatgttaaaaatgaagcattaacttttataatcctaatgttggaaaaaagatgtaacat |
161 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
22686742 |
tagttaaaaacactattgtactagttatgctatatgacaataatgttaagaatgaagcattaacttttataatcctattgttggaaaagagatgtaacat |
22686643 |
T |
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| Q |
162 |
taagctacattgagacaaaaatctctcctttgcccggtggccgttggccacagtttttggattaattgtcatctctct |
239 |
Q |
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| T |
22686642 |
taatctacattgagacaaaaatctctcctttgccgggtggccagtagccacaggttttggatcaattgttatctctct |
22686565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 22687081 - 22687036
Alignment:
| Q |
25 |
gtcaacttagtagaattatggatagcaagtttggtgatagttaaaa |
70 |
Q |
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| T |
22687081 |
gtcaacttagtagaattatagatagcaagtttggtgatagttaaaa |
22687036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 19860097 - 19860185
Alignment:
| Q |
26 |
tcaacttagtagaattatggatagcaagttt-ggtgatagttaaaaacacaattgtactagttatgctatatgacaagaatgttaaaaa |
113 |
Q |
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|||||||||||||||||| ||| | ||| || |||| ||||| |||||| |||| |||| |||| ||||||| ||| |||||||||||| |
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| T |
19860097 |
tcaacttagtagaattatagattgaaaggttaggtggtagttgaaaacataattatacttgttaagctatatcacaggaatgttaaaaa |
19860185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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