View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3613_high_22 (Length: 243)
Name: NF3613_high_22
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 46938339 - 46938122
Alignment:
| Q |
19 |
aatcttactgcctcaacccatgtgcacaacatcagaaacaaggtttatttacttatttatgtacgtatttgcttactggtcagcaaaatttataatatac |
118 |
Q |
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| T |
46938339 |
aatcttactgcctcaaaccatgtgcacaacatcagaaacaaggtttatttacttatttatgtacgtatttgcttactggtcagcaaaatttataatatac |
46938240 |
T |
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| Q |
119 |
tatgttttcta---nnnnnnnnnatttaacnnnnnnntaacaacattgttttgttaaatatatttatttacaatatatttctggtgtgttcatgtgcagg |
215 |
Q |
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||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
46938239 |
tatgttttctatttattttttttatttaacaaaaaaataacaacattgttttgataaatttatttatttacaatatatttccggtgtgttcatgtgcagg |
46938140 |
T |
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| Q |
216 |
agtttgacaaagcctatg |
233 |
Q |
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|||||||||||||||||| |
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| T |
46938139 |
agtttgacaaagcctatg |
46938122 |
T |
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