View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3613_high_23 (Length: 240)

Name: NF3613_high_23
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3613_high_23
NF3613_high_23
[»] chr3 (2 HSPs)
chr3 (1-87)||(41056588-41056674)
chr3 (146-222)||(41056732-41056808)
[»] chr1 (1 HSPs)
chr1 (25-63)||(31667447-31667485)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41056588 - 41056674
Alignment:
Q  1 ttcaggttgttgacatgagtcgagaatgacacaattaaatgtaatcgcatgtgtcggtgtcggtgctccgagtctttgccttactgc 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  41056588 ttcaggttgttgacatgagtcgagaatgacacaattaaatgtaatcgcatgtgtcggtgtcggtgctcttagtctttgccttactgc 41056674  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 41056732 - 41056808
Alignment:
Q  146 ggatggattgaaattgatatagctttcagagcctctgactggaaaggtctggacattggaagattttgaggctcatc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41056732 ggatggattgaaattgatatagctttcagagcctctgactggaaaggtctggacattggaagattttgaggctcatc 41056808  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 31667447 - 31667485
Alignment:
Q  25 aatgacacaattaaatgtaatcgcatgtgtcggtgtcgg 63  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  31667447 aatgacataattaaatgtaatcacatgtgtcggtgtcgg 31667485  T

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