View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3613_high_4 (Length: 408)
Name: NF3613_high_4
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 11401565 - 11401828
Alignment:
| Q |
19 |
aagtcttcaccattaagaaatgatgatactactggaccacttgaagataaggagcaccgtttgttttatctttacttgtaagaaacttagccatcaagca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11401565 |
aagtcttcaccattaagaaatgatgatactactggaccacttgaagataaggagcaccgtttgttttatctttacttgtaagaaacttagccatcaagca |
11401664 |
T |
|
| Q |
119 |
tgtatcttgcttacatgcaagactatctttattaaaatatctgaaccgtctcttcattatatcttagtgattaggtttattcattatgtaaggaaagcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11401665 |
tgtatcttgcttacatgcaagactatctttattaaattatctgaaacgcctcttcattatatcttagtgattaggtttattcattatgtaaggaaaccta |
11401764 |
T |
|
| Q |
219 |
gcctatataaagggtgtcttgtagtccgttgtaaagtaaatcaaagtttgttgaataacaagag |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11401765 |
gcctatataaagggtgtcttgtagtccgttgtaaagtaaatcaaagtgtgttgaataacaagag |
11401828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 11401830 - 11401897
Alignment:
| Q |
324 |
atattctaagagagttatgatgaacaactacaacatcgttcggttcgaaattagatttcagttattga |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11401830 |
atattctaagagagttatgatgaacaactacaacatcgttcggttcgaaattagatttcagttattga |
11401897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University