View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3613_high_5 (Length: 372)
Name: NF3613_high_5
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 34694662 - 34694916
Alignment:
| Q |
1 |
caaaaggtcaaagcaaggaaacatacatgaaagtttgcacatggaactcaattcaatatacaaattcggaaatgttgaggtttcacctacctatgcatct |
100 |
Q |
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| T |
34694662 |
caaaaggccaaagcaaggaaacatacatgaaagtttgcacatggaactcaattcaatatacaaattcggaaatgttgaggtttcacctacctatgcatct |
34694761 |
T |
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| Q |
101 |
tcatatcaattataaacttccaaaatttcacaaggcaaagctaattagtttgatcaaagtgtatgtttttgttcagaacaaacctcatctcgtcttatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694762 |
tcatatcaattataaacttccaaaatttcacaaggcaaagctaattagtttgatcaaagtgtatgtttttgttcagaacaaacctcatctcgtcttatta |
34694861 |
T |
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| Q |
201 |
ttatgtccttttcgtttgtgacatcactacctcaaaacaattcctctcccaattc |
255 |
Q |
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| T |
34694862 |
ttatgtccttttggtttgggacatcactacctcaaaacaattcctctcccaattc |
34694916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 34825557 - 34825512
Alignment:
| Q |
222 |
catcactacctcaaaacaattcctctcccaattcctatctaacatc |
267 |
Q |
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| T |
34825557 |
catcacttcctcaaaacaattcttctcccaatccttatctaacatc |
34825512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 3903244 - 3903183
Alignment:
| Q |
298 |
ccatctcctttaacgcaacaaagatcatctcaattactgaaacataatcacctttgctattc |
359 |
Q |
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| T |
3903244 |
ccatctcctttaacgcaacaaagatcatctcaattacggaaacataatcacctttgctattc |
3903183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 24719482 - 24719543
Alignment:
| Q |
298 |
ccatctcctttaacgcaacaaagatcatctcaattactgaaacataatcacctttgctattc |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24719482 |
ccatctcctttaacgcaacaaagatcatctcaattaccgaaacataatcacctttgctattc |
24719543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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