View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3613_high_7 (Length: 353)
Name: NF3613_high_7
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 47252623 - 47252943
Alignment:
| Q |
20 |
aagttacaacagtctgagaatcattttcaatattaattaatacgcttgaaaatccactaacaaagattaattccaaactcataatattcattcacccata |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
47252623 |
aagttacaacagtctgagaatcattttcaatattaattaatacgcttgaaaatccactaacaaagattaattccaaactcataatattca----cacata |
47252718 |
T |
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| Q |
120 |
caacatctgtttcgaatcacactcaatgagtgattttactactacat-tatctctagtgcgtcctattctcatccctagctagtgtttccaatttgtcaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47252719 |
caacatctgtttcgaatcacactcaatgagtgattttaccactatacatatctctagtgcgtcctattgtcatccctagctagtgtttccaatttgtcaa |
47252818 |
T |
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| Q |
219 |
tcataaattaatgaagaaccaaatccatgcatgagagtgacacaaagtttgtaacagaagt----aacaataatcaaaataaagcctggggctaaaaatg |
314 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47252819 |
tcataagttaatgaagaaccaaatccatgcatgagagtgacacaaagtttgtaacagaagtaacaaacaataatcaaaataaagcctggggctaaaaatg |
47252918 |
T |
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| Q |
315 |
caaggctagaaaaatatgacatttg |
339 |
Q |
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||||||||||||||||||||||||| |
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| T |
47252919 |
caaggctagaaaaatatgacatttg |
47252943 |
T |
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