View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3613_low_11 (Length: 287)
Name: NF3613_low_11
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_low_11 |
 | |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 2836800 - 2837058
Alignment:
| Q |
11 |
cagagagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836800 |
cagagagcttcagcaaatttggcaagtttttcagtgactgcattggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagttt |
2836899 |
T |
|
| Q |
111 |
ggaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctcg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836900 |
ggaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctcg |
2836999 |
T |
|
| Q |
211 |
catattgcagtgatattaagtgattcaaggtgctgcatcttttctactgttgcacttaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
2837000 |
catattgcagtgatattaagtgattcaaggtgctgcatcttttctactgctgcacttaa |
2837058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 2854010 - 2854267
Alignment:
| Q |
11 |
cagagagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagttt |
110 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
2854010 |
cagatagcttcagtaaatttggcaagttttttagtgactgcattggatcatctttcagcttggataaagccagctttatctcaacaagatactccaattt |
2854109 |
T |
|
| Q |
111 |
ggaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctcg |
210 |
Q |
| |
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| | ||| | |||||| | | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
2854110 |
tgggatccattcaggcaatgtatctagtttagctttcaaatgaagccgcctaagttttggtggggttgacgcaaagtttaagtcaataatttcatcctct |
2854209 |
T |
|
| Q |
211 |
catattgcagtgatattaagtgattcaaggtgctgcatcttttctactgttgcactta |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
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|
| T |
2854210 |
gctattgcagtgatattaagtgattcaaggtgttgcatctcttctactgcagcactta |
2854267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 2750932 - 2750679
Alignment:
| Q |
15 |
gagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaa |
114 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||||| ||| | | |
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|
| T |
2750932 |
gagcttcagaagatttggcaaatttttcagtgactgcaacggatcatctttcagcttggataaagccagacaaatctgaacaagacactcaaattttgga |
2750833 |
T |
|
| Q |
115 |
acccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctcgcata |
214 |
Q |
| |
|
| ||||| ||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| || |
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|
| T |
2750832 |
atccaatcaggaaacttctctagtctagctttcaaatggagccgttgaagttttggtggggttgacgcaaagtttaagtcaataatttcatcctcttcta |
2750733 |
T |
|
| Q |
215 |
ttgcagtgatattaagtgattcaaggtgctgcatcttttctactgttgcactta |
268 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || ||||| ||||||| |
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|
| T |
2750732 |
ttgcagtgatattaagtgattcaaggtgttgcatctcttgtactgcagcactta |
2750679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 5414822 - 5414578
Alignment:
| Q |
15 |
gagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaa |
114 |
Q |
| |
|
||||||||| | |||||| |||||||||||||| |||| ||||||||| ||||||||||||| |||| | |||||| |||||||| |||| || ||| |
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|
| T |
5414822 |
gagcttcagaagatttggtaagtttttcagtgatggcataggatcatctgtcagcttggataacgccatcattatctgaacaagacattcaaactttgaa |
5414723 |
T |
|
| Q |
115 |
acccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctcgcata |
214 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||| || |
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| T |
5414722 |
atccaatcaggcaacttctctagtctagctttcaaatgaagccgacgaagttttggcggggttgacacaaagtttaagtcaataatttcatcctcggcta |
5414623 |
T |
|
| Q |
215 |
ttgcagtgatattaagtgattcaaggtgctgcatcttttctactg |
259 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | |||||| |
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|
| T |
5414622 |
ttgcagtgatattaagtgattcaaggtattgcatctctactactg |
5414578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 2799279 - 2799104
Alignment:
| Q |
34 |
aagtttttcagtgactgcatcggatcatctttcagcttggataaagc-cagctttatctcaacaagaccctcaagtttggaaacccaattaggcaacttc |
132 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||||| | | || ||||| |||||||| || ||| |||| ||||||||| | || ||||| ||||||||| |
|
|
| T |
2799279 |
aagttttgcagtgactgcaatggatcatatttcaacataga-aaagctcagctttaccttaacgagacactcaagttttgcaatccaatcgggcaacttc |
2799181 |
T |
|
| Q |
133 |
tgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctc |
209 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||| ||||||| ||| | |||||||| |||||||||||||||||| |
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|
| T |
2799180 |
tgtagtctacctttcaaatgtagccgctgaagttggggtggggatgatataaagttcaggtcaataatttcatcctc |
2799104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 2770981 - 2770782
Alignment:
| Q |
31 |
ggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaaacccaattaggcaact |
130 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||| | | || ||| ||| ||| || |||||| | |||||||| | || ||||| |||||||| |
|
|
| T |
2770981 |
ggcatgtttttcagtgactgcagtggattatctttcaacatagaaaaactcagtcttaccttaacaaggcactcaagttctggaatccaatcaggcaact |
2770882 |
T |
|
| Q |
131 |
tctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctcgcatattgcagtgatattaag |
230 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| ||||||| ||| | | |||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
2770881 |
tctgtagtctagctttcaaatgtagccgcagaagttggggtggggatgatatacagttcaagtcaagtatttcatcctcagatattgcacagatattaag |
2770782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 242
Target Start/End: Complemental strand, 2792235 - 2792024
Alignment:
| Q |
31 |
ggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaaacccaattaggcaact |
130 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||| | | || ||| ||| ||| || |||||| | |||||||| | || ||||| |||||||| |
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|
| T |
2792235 |
ggcaagtttttgagtgactgcagtggatcatagttcaacatagaaaaactcagtcttaccttaacaaggcactcaagttctggaatccaatcaggcaact |
2792136 |
T |
|
| Q |
131 |
tctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctcgcatattgcagtgatattaag |
230 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||||| || |||| ||| | | |||||||||| || ||||||||||| ||||||||| ||||||||| |
|
|
| T |
2792135 |
tttgtagtctagctttcaaatgtagccgcagaagttggggaggggatgatatacagttcaagtcgatgatttcatcctcagatattgcagagatattaag |
2792036 |
T |
|
| Q |
231 |
tgattcaaggtg |
242 |
Q |
| |
|
|||||||||| |
|
|
| T |
2792035 |
atattcaaggtg |
2792024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 2761148 - 2760936
Alignment:
| Q |
18 |
cttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaaacc |
117 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||| ||||||| ||||| | |||||||||| |||||||||||||||| ||||||||| | || | |
|
|
| T |
2761148 |
cttcaacagatttggcaagtttttaagtgactgcagtggatcatttttcaagtaagataaagccaactttatctcaacaagatactcaagttttggaatc |
2761049 |
T |
|
| Q |
118 |
caattaggcaacttctgtagtctagctttcaaatgaagccgcct-aagttttggtggggttgacacaaagttcaagtcaataatttcatcctcgcatatt |
216 |
Q |
| |
|
|| | |||||| | | |||| |||||||||||||||| ||||| ||||| || || | ||| ||||| ||||||| ||| |||||||||| | ||| |
|
|
| T |
2761048 |
cattcaggcaatgtatctagtttagctttcaaatgaag-cgcctgaagttggggcggagatgagacaaaattcaagttaatgctttcatcctcaccaatt |
2760950 |
T |
|
| Q |
217 |
gcagtgatattaag |
230 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
2760949 |
gtagtgatattaag |
2760936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 2820494 - 2820353
Alignment:
| Q |
18 |
cttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttggaaacc |
117 |
Q |
| |
|
|||||||| || |||||||||||||| || |||| ||||||| ||||| ||| |||||||||||||| ||||| |||||| ||||||||| | || | |
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|
| T |
2820494 |
cttcagcaggttcggcaagtttttcagagattgcagtggatcatttttcaacttagataaagccagcttgatctccacaagagactcaagttttggaatc |
2820395 |
T |
|
| Q |
118 |
caattaggcaacttctgtagtctagctttcaaatgaagccgc |
159 |
Q |
| |
|
|||| |||||| | | || ||| |||||||||||||||||| |
|
|
| T |
2820394 |
caatcaggcaatgtatctaatctggctttcaaatgaagccgc |
2820353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 2809200 - 2809120
Alignment:
| Q |
19 |
ttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaaga |
99 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| | ||||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
2809200 |
ttcaacaaatatggcaagtttttcagtgactgtaatggatcatttttcaactgagataaagccagctttatctcaacaaga |
2809120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 4350 - 4588
Alignment:
| Q |
12 |
agagagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagtttg |
111 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||| | | | |||||| ||||||| ||| ||||| |
|
|
| T |
4350 |
agagagcttcaacagatttggcaagtttttcagtgactgcattggatcgtctttcagcttggataaacctaaccttatcttaacaagaaactcgagtttt |
4449 |
T |
|
| Q |
112 |
gaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctcgc |
211 |
Q |
| |
|
| || ||||| ||| ||| ||| || ||| |||||||||||||| ||| |||||| ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
4450 |
ggaatccaatcaggtaacctctctaatctggctttcaaatgaagtcgctgaagtttgggtggggatgacacaaagtttaagtcaataatttcatcctctg |
4549 |
T |
|
| Q |
212 |
atattgcagtgatattaagtgattcaaggtgctgcatct |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4550 |
ctattgcagtgatattaagtgattcaaggtgttgcatct |
4588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 11115961 - 11116209
Alignment:
| Q |
11 |
cagagagcttcagcaaatttggcaagtttttcagtgactgcatcggatcatctttcagcttggataaagccagctttatctcaacaagaccctcaagttt |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||| || |||||| || |
|
|
| T |
11115961 |
cagagagcttcagcagatttggcaagtttttcagtgactgcattggatcatctttcagcttggataaagctagccttatctaaacaatacactcaagatt |
11116060 |
T |
|
| Q |
111 |
ggaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctc- |
209 |
Q |
| |
|
| || ||||| ||||||||| | |||||||||||||||||||| |||| |||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
11116061 |
tggaatccaatcaggcaacttatcaagtctagctttcaaatgaagtcgccgaagtttgggt------------aaggtcaagtcaataatttcatcctct |
11116148 |
T |
|
| Q |
210 |
gcatattgcagtgatattaagtgattcaaggtgctgcatcttttctactgttgcacttaatg |
271 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||| |
|
|
| T |
11116149 |
gca-attgcagtgatattaagtgattcaaggtgttgcatctcttctattgcagcacttaatg |
11116209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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