View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3613_low_12 (Length: 282)
Name: NF3613_low_12
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 13009283 - 13009534
Alignment:
| Q |
12 |
ttggaggagtcgaagaagagggagagaaagaattgttgtggacttttgagggagattcagaagattgagaagtgtgctagggggatgaatgaattggctg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13009283 |
ttggagaagtcgaagaagagggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctg |
13009382 |
T |
|
| Q |
112 |
attctttggaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattgga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13009383 |
attctttggaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattgga |
13009482 |
T |
|
| Q |
212 |
tcctttggaaagacaagttagagaagtgtttcatagaattgttcgtggtaga |
263 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13009483 |
tcctttggaaagacaagttagagaagtatttcatagaattgttcgtggtaga |
13009534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 12976884 - 12977135
Alignment:
| Q |
12 |
ttggaggagtcgaagaagagggagagaaagaattgttgtggacttttgagggagattcagaagattgagaagtgtgctagggggatgaatgaattggctg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976884 |
ttggagaagtcgaagaagagggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctg |
12976983 |
T |
|
| Q |
112 |
attctttggaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattgga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
12976984 |
attctttggaatttcctttgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagttttaaagatggattgga |
12977083 |
T |
|
| Q |
212 |
tcctttggaaagacaagttagagaagtgtttcatagaattgttcgtggtaga |
263 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
12977084 |
tcctttggaaatacaagtcagagaagtgtttcatagaattgttcatggtaga |
12977135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 13031631 - 13031892
Alignment:
| Q |
2 |
cgtgcggacgttggaggagtcgaagaagagggagagaaagaattgttgtggacttttgagggagattcagaagattgagaagtgtgctagggggatgaat |
101 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| |||| |||||| |||||||||| |||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
13031631 |
cgtgcggatgttgttggagtcgaagaagagggagatgaagagttgttgcggacttttgaaggagattctggagattgagaagtgtgctagggggatgaat |
13031730 |
T |
|
| Q |
102 |
gaattggctgattctttggaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaag |
201 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13031731 |
gaactggctgattctttgcggtttcctttgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgaaggtttgtgaaggtttgaaag |
13031830 |
T |
|
| Q |
202 |
atggattggatcctttggaaagacaagttagagaagtgtttcatagaattgttcgtggtaga |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13031831 |
atggattggatcctttggaaagacaagttagagaagtgtttcatagaattgtttgtggtaga |
13031892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 13012831 - 13013092
Alignment:
| Q |
2 |
cgtgcggacgttggaggagtcgaagaagagggagagaaagaattgttgtggacttttgagggagattcagaagattgagaagtgtgctagggggatgaat |
101 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13012831 |
cgtgcggatgttggggaagtcgaagaagagggagatgaagagttgttgcggacttttgagggagattcaggagattgagaagtgtgctagggggatgaat |
13012930 |
T |
|
| Q |
102 |
gaattggctgattctttggaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaag |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
13012931 |
gaattggctgattctgtggaatttcctttgagtgaagagaaagaagaggaacttagggttaaagttgcagatgtggtgattgtttgtgaaagtttgaaag |
13013030 |
T |
|
| Q |
202 |
atggattggatcctttggaaagacaagttagagaagtgtttcatagaattgttcgtggtaga |
263 |
Q |
| |
|
|||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13013031 |
atggattggatcctttcgtaatacaagtcagagaagtgtttcatagaattgttcgtggtaga |
13013092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University