View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3613_low_19 (Length: 250)
Name: NF3613_low_19
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_low_19 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 12976443 - 12976678
Alignment:
| Q |
15 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976443 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgtttcttcctttg |
12976542 |
T |
|
| Q |
115 |
gtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgtgtcaaggaa |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12976543 |
gtaatagaaatagatcatttagtagaaacaatgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgtatcaaggaa |
12976642 |
T |
|
| Q |
215 |
ttggtcagctgcaaaacaactacaagcactagggac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976643 |
ttggtcagctgcaaaacaactacaagcactagggac |
12976678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 13008842 - 13009077
Alignment:
| Q |
15 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13008842 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgtttcttcctttg |
13008941 |
T |
|
| Q |
115 |
gtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgtgtcaaggaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13008942 |
gtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatcacaagttggtcattttagatcactttcttggagtgtatcaaggaa |
13009041 |
T |
|
| Q |
215 |
ttggtcagctgcaaaacaactacaagcactagggac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13009042 |
ttggtcagctgcaaaacaactacaagcactagggac |
13009077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 13012401 - 13012635
Alignment:
| Q |
15 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13012401 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttg |
13012500 |
T |
|
| Q |
115 |
gtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgtgtcaaggaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
13012501 |
gtaatagaaatagatcatttggtagaaacaatgttaatggagataaagggtcatctcaagttgg-cattttagatcactttcttggagtgtatcaaggaa |
13012599 |
T |
|
| Q |
215 |
ttggtcagctgcaaaacaactacaagcactagggac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13012600 |
ttggtcagctgcaaaacaactacaagcaatagggac |
13012635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 13031198 - 13031432
Alignment:
| Q |
15 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13031198 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttg |
13031297 |
T |
|
| Q |
115 |
gtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgtgtcaaggaa |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| || |||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||| || |
|
|
| T |
13031298 |
gtaataaaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaagttggtcattttagatcactttcaaggagtgtatcaagaaa |
13031397 |
T |
|
| Q |
215 |
ttggtcagctgcaaaacaactacaagcactagggac |
250 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
13031398 |
ttggtcagctg-aaaacaactacaagcaatagggac |
13031432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 12997603 - 12997657
Alignment:
| Q |
15 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggta |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12997603 |
ggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggta |
12997657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University