View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3613_low_21 (Length: 244)
Name: NF3613_low_21
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3613_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48672251 - 48672025
Alignment:
| Q |
1 |
ccatgttcttgtcactcaattcaagattcttttgaagctcatcaagaatggttttgctagcagcatgcacacaaaaatgctcaaaagctagtttgtagtt |
100 |
Q |
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| T |
48672251 |
ccatgttcttgtcactcaattcaagattcttttgaagctcatcaagaatggttttgctggcagcatgcacacaaaaatgctcaaaagctagtttgtagtt |
48672152 |
T |
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| Q |
101 |
aggaatgtatggcttgtttgatgatggtgaatttttatcagattttccaccaccaaaccagttcctccacactaatgtagcaaagaaaataagctgttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672151 |
aggaatgtatggcttgtttgatgatggtgaatttttatcagattttccaccaccaaaccagttcctccacactaatgtagcaaagaaaataagctgttct |
48672052 |
T |
|
| Q |
201 |
gaaaagggtaggaccaatggtcctagt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48672051 |
gaaaagggtaggaccaatggtcctagt |
48672025 |
T |
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