View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3613_low_25 (Length: 238)

Name: NF3613_low_25
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3613_low_25
NF3613_low_25
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-238)||(221857-222082)
[»] chr7 (5 HSPs)
chr7 (66-230)||(47556199-47556363)
chr7 (66-230)||(22862895-22863059)
chr7 (15-153)||(20695241-20695379)
chr7 (15-153)||(20700719-20700857)
chr7 (77-235)||(12124506-12124664)
[»] chr8 (1 HSPs)
chr8 (66-230)||(10798829-10798993)
[»] chr4 (2 HSPs)
chr4 (68-237)||(17823923-17824092)
chr4 (191-235)||(15646310-15646354)
[»] scaffold0032 (2 HSPs)
scaffold0032 (15-238)||(50121-50344)
scaffold0032 (18-121)||(52936-53039)
[»] chr6 (1 HSPs)
chr6 (82-230)||(5388673-5388821)
[»] chr3 (3 HSPs)
chr3 (77-235)||(17150954-17151112)
chr3 (15-112)||(23824437-23824534)
chr3 (192-230)||(23824603-23824641)
[»] chr2 (1 HSPs)
chr2 (191-230)||(21967628-21967667)


Alignment Details
Target: scaffold0003 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 222082 - 221857
Alignment:
Q  13 catcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  222082 catcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacgacattaaaatcaccaag 221983  T
Q  113 aacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatggcgaccactactatcgcaaggaccataaatatttgcc 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  221982 aacacaccacacagcttccccatgtaactgaatcaaattagtcaaagcaccccacaaaacctggcgaccactactatcgcaaggagcataaatatttgcc 221883  T
Q  213 aaacaaaacacttcattactttttat 238  Q
    ||||||||||||||||||||||||||    
T  221882 aaacaaaacacttcattactttttat 221857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 47556199 - 47556363
Alignment:
Q  66 cgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcacccc 165  Q
    |||||||||| |||  ||||||| |||||| ||||||| ||||||||||||||||||||  |||||||||||||  ||| |||||||| ||||| | |||    
T  47556199 cgacctcttctttcagcactagaacgaacatcattaaagtcaccaagaacacaccacaccgcttccccatgtaaaggaaacaaattagacaaagaatccc 47556298  T
Q  166 acaaagcatggcgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcatta 230  Q
    ||||  | || || || |||||||| |||||| |||||||||| |||||||| ||||| ||||||    
T  47556299 acaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcatta 47556363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 230
Target Start/End: Complemental strand, 22863059 - 22862895
Alignment:
Q  66 cgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcacccc 165  Q
    |||||||||| |||  ||||||| |||||| |||||||||||||||||||||||||  |  |||||||||||||  ||| |||||||| ||||| | |||    
T  22863059 cgacctcttctttcagcactagaacgaacaccattaaaatcaccaagaacacaccaagccgcttccccatgtaaaggaaacaaattagacaaagaatccc 22862960  T
Q  166 acaaagcatggcgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcatta 230  Q
    ||||  | || || || |||||||| |||| | |||||||||| |||||||| ||||| ||||||    
T  22862959 acaacacctgtcgccccctactatcacaagaagcataaatattcgccaaacagaacacctcatta 22862895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 20695379 - 20695241
Alignment:
Q  15 tcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaa 114  Q
    ||||||||||||||||||||| |||| ||  || |  | ||||| ||  |||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  20695379 tcaatgaactgattaaaaggagcataatcaccataagaagaattatccgctcgccctcttctttcttcactagaccgaacgacattaaaatcaccaagaa 20695280  T
Q  115 cacaccacacaacttccccatgtaactgaatcaaattag 153  Q
     ||||||  || ||||  |||||| ||||||||||||||    
T  20695279 tacaccaagcagcttcatcatgtacctgaatcaaattag 20695241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 20700857 - 20700719
Alignment:
Q  15 tcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaa 114  Q
    ||||||||||||||||||||| |||| ||  || |  | ||||| ||  |||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  20700857 tcaatgaactgattaaaaggagcataatcaccataagaagaattatccgctcgccctcttctttcttcactagaccgaacgacattaaaatcaccaagaa 20700758  T
Q  115 cacaccacacaacttccccatgtaactgaatcaaattag 153  Q
     ||||||  || ||||  |||||| ||||||||||||||    
T  20700757 tacaccaagcagcttcatcatgtacctgaatcaaattag 20700719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 12124506 - 12124664
Alignment:
Q  77 ttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatgg 176  Q
    |||||||||||| || |||||||| || |||||||| ||||||||  | || || ||||| | |   | ||||||||  | |||  ||||||||   |||    
T  12124506 ttcttcactagaacgcacaacattgaagtcaccaagcacacaccaagctacatctccatgaaccaagaacaaattagagatagcttcccacaaaagctgg 12124605  T
Q  177 cgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcattactttt 235  Q
    || || ||| ||| ||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  12124606 cgccccctattattgcaaggagcataaatatttaccaaacaaaacatttcattattttt 12124664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 230
Target Start/End: Complemental strand, 10798993 - 10798829
Alignment:
Q  66 cgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcacccc 165  Q
    |||||||||| |||  ||||||| |||||| ||||||| |||||||||||||||||  |  |||||||||||||  ||| |||||||| ||||| | |||    
T  10798993 cgacctcttctttcagcactagaacgaacatcattaaagtcaccaagaacacaccaagccgcttccccatgtaaaggaaacaaattagacaaagaatccc 10798894  T
Q  166 acaaagcatggcgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcatta 230  Q
    ||||  | || || || |||||||| |||||| |||||||||| |||||||  ||||| ||||||    
T  10798893 acaacacttgtcgccccctactatcacaaggagcataaatattcgccaaactgaacacctcatta 10798829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 237
Target Start/End: Complemental strand, 17824092 - 17823923
Alignment:
Q  68 acctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccac 167  Q
    |||||||| |||||||||||| ||||| |||||||| |||||||| ||||||||  | || || || |||| | ||| ||||||||  |  ||| |||||    
T  17824092 acctcttctttcttcactagaacgaacgacattaaagtcaccaagcacacaccaagctacatcaccgtgtaccagaaacaaattagagaccgcatcccac 17823993  T
Q  168 aaagcatggcgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcattacttttta 237  Q
    ||| | || || || ||| |||  |||||| |||||||||||||||||||||||| ||||||| ||||||    
T  17823992 aaaacctgacgtcccctattattacaaggagcataaatatttgccaaacaaaacatttcattatttttta 17823923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 15646354 - 15646310
Alignment:
Q  191 gcaaggaccataaatatttgccaaacaaaacacttcattactttt 235  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  15646354 gcaaggagcataaatatttgccaaacaaaacacttcattattttt 15646310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 50344 - 50121
Alignment:
Q  15 tcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaa 114  Q
    ||||||||||||||||||||| |||| ||  || | |||| ||| || |  || ||||||| |||||||||||| ||||| |||||||| || ||||| |    
T  50344 tcaatgaactgattaaaaggagcatagtcaacataaaaggtattttcaaaacggcctcttctttcttcactagaacgaacgacattaaagtcgccaagca 50245  T
Q  115 cacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatggcgaccactactatcgcaaggaccataaatatttgccaa 214  Q
    || ||||  | || || || |||||  | | ||||||||  | |||  |||||| | | || || || ||| |||| |||||| ||||||||||||||||    
T  50244 caaaccaagccacatcaccgtgtaatagtagcaaattagagacagcgtcccacagaacctgtcgccccctattatcacaaggagcataaatatttgccaa 50145  T
Q  215 acaaaacacttcattactttttat 238  Q
    |||||||||||||||| |||||||    
T  50144 acaaaacacttcattattttttat 50121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 53039 - 52936
Alignment:
Q  18 atgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacac 117  Q
    |||||||||||||||||| |||| ||  || | |||| ||| || |  || ||||||| |||||||||||| ||||| |||||||| |||||||| ||||    
T  53039 atgaactgattaaaaggagcatagtcaacataaaaggtattttcaaaacggcctcttctttcttcactagaacgaacgacattaaagtcaccaagcacac 52940  T
Q  118 acca 121  Q
    ||||    
T  52939 acca 52936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 5388821 - 5388673
Alignment:
Q  82 cactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatggcgacc 181  Q
    ||||||| |||||| |||||||||||||||||||||||||  |  |||| ||||||||  ||| |||||||| ||||| | |||||||  | ||  | ||    
T  5388821 cactagaacgaacatcattaaaatcaccaagaacacaccaagccgcttctccatgtaatggaaacaaattagacaaagaatcccacaacacctgatgccc 5388722  T
Q  182 actactatcgcaaggaccataaatatttgccaaacaaaacacttcatta 230  Q
     ||||| || |||||| |||||| ||| |||||||| ||||| ||||||    
T  5388721 cctactgtcacaaggagcataaacattcgccaaacagaacacctcatta 5388673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 17151112 - 17150954
Alignment:
Q  77 ttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatgg 176  Q
    |||||||||||  |||||||||||||| |||||||| ||||||||  | || || ||||| | |   | ||||||||  | |||  ||||||||   ||     
T  17151112 ttcttcactagttcgaacaacattaaagtcaccaagcacacaccaagctacatcaccatgaaccaagaacaaattagagacagcttcccacaaactctga 17151013  T
Q  177 cgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcattactttt 235  Q
    || || ||| ||| ||||||| ||||||||||| |||||||||||||||||||| ||||    
T  17151012 cgccccctaatattgcaaggagcataaatatttaccaaacaaaacacttcattattttt 17150954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 23824437 - 23824534
Alignment:
Q  15 tcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaag 112  Q
    |||||||||||||| |||| | |||| || |  || |||||||| || || ||||||| || ||||||||| || |||||||||||||| ||||||||    
T  23824437 tcaatgaactgattgaaagtatcatagtcagttgaaaaggaattatcaacacgacctcgtctttcttcacttgaacgaacaacattaaagtcaccaag 23824534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 23824603 - 23824641
Alignment:
Q  192 caaggaccataaatatttgccaaacaaaacacttcatta 230  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  23824603 caaggagcatatatatttgccaaacaaaacacttcatta 23824641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 21967628 - 21967667
Alignment:
Q  191 gcaaggaccataaatatttgccaaacaaaacacttcatta 230  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  21967628 gcaaggagcataaatatttaccaaacaaaacacttcatta 21967667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University