View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3613_low_30 (Length: 234)

Name: NF3613_low_30
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3613_low_30
NF3613_low_30
[»] chr7 (29 HSPs)
chr7 (18-219)||(3148276-3148477)
chr7 (102-217)||(6790399-6790514)
chr7 (79-201)||(1302277-1302399)
chr7 (70-217)||(8647658-8647805)
chr7 (94-217)||(10492999-10493122)
chr7 (94-217)||(13332148-13332271)
chr7 (83-201)||(8660214-8660332)
chr7 (82-219)||(8630197-8630334)
chr7 (79-217)||(8655315-8655453)
chr7 (79-217)||(8668431-8668569)
chr7 (82-219)||(8584532-8584669)
chr7 (110-217)||(7876832-7876939)
chr7 (94-219)||(27829341-27829466)
chr7 (81-217)||(17261360-17261496)
chr7 (102-219)||(8610653-8610770)
chr7 (111-211)||(8602732-8602832)
chr7 (81-217)||(17269068-17269204)
chr7 (126-211)||(8591411-8591496)
chr7 (111-202)||(8582661-8582752)
chr7 (126-212)||(8635502-8635588)
chr7 (102-212)||(29576992-29577102)
chr7 (117-199)||(8104069-8104151)
chr7 (117-205)||(8546679-8546767)
chr7 (117-156)||(8382289-8382328)
chr7 (111-208)||(8577287-8577384)
chr7 (117-172)||(8016336-8016391)
chr7 (111-178)||(8568836-8568903)
chr7 (111-202)||(8572588-8572679)
chr7 (113-211)||(8538804-8538902)
[»] chr1 (3 HSPs)
chr1 (79-219)||(4677536-4677676)
chr1 (81-217)||(34465246-34465382)
chr1 (110-217)||(15596056-15596163)
[»] chr5 (2 HSPs)
chr5 (82-217)||(42554185-42554320)
chr5 (116-214)||(28220950-28221048)
[»] chr4 (5 HSPs)
chr4 (63-217)||(9323062-9323217)
chr4 (63-217)||(9377541-9377696)
chr4 (63-217)||(9335034-9335188)
chr4 (79-219)||(30776083-30776223)
chr4 (111-205)||(35133452-35133546)
[»] chr2 (9 HSPs)
chr2 (111-219)||(16661062-16661170)
chr2 (74-217)||(43626281-43626424)
chr2 (110-211)||(16656604-16656705)
chr2 (78-214)||(12244404-12244540)
chr2 (81-216)||(7543245-7543380)
chr2 (81-216)||(12000301-12000436)
chr2 (111-216)||(12235796-12235901)
chr2 (82-212)||(12257917-12258047)
chr2 (82-216)||(14705432-14705566)
[»] chr8 (3 HSPs)
chr8 (94-217)||(43745805-43745925)
chr8 (113-205)||(12529868-12529960)
chr8 (149-217)||(43431028-43431096)
[»] chr6 (1 HSPs)
chr6 (82-162)||(28911283-28911363)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 3148276 - 3148477
Alignment:
Q  18 aacagtaaatacatgcatttcaaaaaccaacaatacagaaatgaaagattatagaaaagatatttaccaaaaacaatgttttcagggtttgtggcagctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  3148276 aacagtaaatacatgcatttcaaaaaccaacaatacagaaattaaagattatagaaaagatatttaccaaaaacagtgttttcagggtttgtgggagctt 3148375  T
Q  118 gattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3148376 gattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactct 3148475  T
Q  218 gt 219  Q
    ||    
T  3148476 gt 3148477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 6790399 - 6790514
Alignment:
Q  102 gggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgt 201  Q
    ||||| ||||||||||||| ||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  6790399 gggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgt 6790498  T
Q  202 gaataatctcaactct 217  Q
    ||||||||||||||||    
T  6790499 gaataatctcaactct 6790514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 1302277 - 1302399
Alignment:
Q  79 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 178  Q
    |||||||||||||| | |||||||| || || ||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||    
T  1302277 atttaccaaaaacagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgt 1302376  T
Q  179 ggttttgttgccttggtcattgt 201  Q
     ||||||||||||||||| ||||    
T  1302377 tgttttgttgccttggtcgttgt 1302399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 8647658 - 8647805
Alignment:
Q  70 agaaaagatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaa 169  Q
    |||| ||| |||||||||| ||| ||||   |||||| |  ||||| ||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||    
T  8647658 agaatagaaatttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaa 8647757  T
Q  170 agaaggtgtggttttgttgccttggtcattgtgaataatctcaactct 217  Q
    ||||||||| ||| |||| ||||| |||||||||||||||||||||||    
T  8647758 agaaggtgtagttctgtttccttgatcattgtgaataatctcaactct 8647805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 10493122 - 10492999
Alignment:
Q  94 tgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttg 193  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||   |||||||||||||||||||||| ||| | || |||||    
T  10493122 tgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttg 10493023  T
Q  194 gtcattgtgaataatctcaactct 217  Q
     |||||||||||||| ||||||||    
T  10493022 atcattgtgaataatttcaactct 10492999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 13332271 - 13332148
Alignment:
Q  94 tgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttg 193  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||| ||| ||||||||||   |||||||||||||||||||||| ||| | || |||||    
T  13332271 tgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttg 13332172  T
Q  194 gtcattgtgaataatctcaactct 217  Q
     |||||||||||||||||||||||    
T  13332171 atcattgtgaataatctcaactct 13332148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 8660214 - 8660332
Alignment:
Q  83 accaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggtt 182  Q
    |||||||||| ||||| |||| || || ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||    
T  8660214 accaaaaacagtgtttacaggattggttgcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgtt 8660313  T
Q  183 ttgttgccttggtcattgt 201  Q
    ||||| |||||||| ||||    
T  8660314 ttgtttccttggtcgttgt 8660332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 8630197 - 8630334
Alignment:
Q  82 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 181  Q
    ||||||| ||| ||||||  |||||  ||||||| |||| |||||||||| |||||||||||||||||||||| || |||||||| || ||||||||| |    
T  8630197 taccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgat 8630296  T
Q  182 tttgttgccttggtcattgtgaataatctcaactctgt 219  Q
    ||| |||||||  |||||||||||||||||||||||||    
T  8630297 tttattgccttcatcattgtgaataatctcaactctgt 8630334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 8655315 - 8655453
Alignment:
Q  79 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 178  Q
    |||||||||| ||| ||||||| ||||| || |||| |||||||| |||  |||  |||| ||||||||||| ||||||||||||||||| |||||||||    
T  8655315 atttaccaaatacagtgttttcggggttggtagcagattgattctcagctccattgccaatcaacctttgataatcagtgaaagcaacaacagaaggtgt 8655414  T
Q  179 ggttttgttgccttggtcattgtgaataatctcaactct 217  Q
     ||| | |||||||| |||||||||||||||||||||||    
T  8655415 agttctattgccttgatcattgtgaataatctcaactct 8655453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 8668431 - 8668569
Alignment:
Q  79 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 178  Q
    |||||||||| | | ||||||||||||| || |||| |||||||||||||||||| |||| ||||||||| ||||   ||||||||||||||||||||||    
T  8668431 atttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgt 8668530  T
Q  179 ggttttgttgccttggtcattgtgaataatctcaactct 217  Q
      ||  ||| ||||| |||||||||||||||||||||||    
T  8668531 tattcggtttccttgatcattgtgaataatctcaactct 8668569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 8584669 - 8584532
Alignment:
Q  82 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 181  Q
    ||||||| ||| |||| || |||||  | ||||| |||| |||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||| |    
T  8584669 taccaaagacagtgttctctgggttgatagcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgat 8584570  T
Q  182 tttgttgccttggtcattgtgaataatctcaactctgt 219  Q
    ||| |||||||  || ||||||||||||||||||||||    
T  8584569 tttattgccttcatcgttgtgaataatctcaactctgt 8584532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 7876939 - 7876832
Alignment:
Q  110 ggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatc 209  Q
    |||||| ||||| || ||||||||||||| ||||||||||||||  ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||     
T  7876939 ggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatt 7876840  T
Q  210 tcaactct 217  Q
    || |||||    
T  7876839 tcgactct 7876832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 27829466 - 27829341
Alignment:
Q  94 tgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttg 193  Q
    |||||| |||||| |  |||||||| ||||||||||||||||||| |||||| || |  || |||||||||||| |||||||||| || |||||||||||    
T  27829466 tgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgtcttgttgccttg 27829367  T
Q  194 gtcattgtgaataatctcaactctgt 219  Q
     ||||||||||||||||| |||||||    
T  27829366 ttcattgtgaataatctccactctgt 27829341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 17261360 - 17261496
Alignment:
Q  81 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 180  Q
    |||||||| ||  ||||||| |||||| ||||||||||||||||||| |||||||| | |||||||| ||| | ||  ||||||||||||||||| ||      
T  17261360 ttaccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaa 17261459  T
Q  181 ttttgttgccttggtcattgtgaataatctcaactct 217  Q
    ||||||| ||||| ||||||||||| |||||||||||    
T  17261460 ttttgtttccttgatcattgtgaatgatctcaactct 17261496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 8610653 - 8610770
Alignment:
Q  102 gggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgt 201  Q
    |||||||  ||||||||||| |||||||||||||| | ||||||||||||| ||| |||||||||||||||||| |||||| |||| ||||| ||||| |    
T  8610653 gggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattat 8610752  T
Q  202 gaataatctcaactctgt 219  Q
    | || |||||| ||||||    
T  8610753 ggattatctcagctctgt 8610770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 8602732 - 8602832
Alignment:
Q  111 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 210  Q
    ||||| ||||| || ||||||||||| | |||||||| ||||||||| ||||||||||||||||| || ||| |||| ||||| ||||||||||||||||    
T  8602732 gcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatct 8602831  T
Q  211 c 211  Q
    |    
T  8602832 c 8602832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 17269068 - 17269204
Alignment:
Q  81 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 180  Q
    |||||||| ||  ||||||| |||||  ||||||||||||||||||| | |||||| |  ||||||| ||| | ||  |||||||||||||| || || |    
T  17269068 ttaccaaagacggtgttttctgggttcatggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtag 17269167  T
Q  181 ttttgttgccttggtcattgtgaataatctcaactct 217  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  17269168 ttttgttgccttgatcattgtgtataatctcaactct 17269204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 8591411 - 8591496
Alignment:
Q  126 gcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctc 211  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||  || | || ||||| |||||||||||||||||    
T  8591411 gcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctc 8591496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 8582661 - 8582752
Alignment:
Q  111 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtg 202  Q
    ||||||||||| || ||||||||||||| ||| ||||||  || ||| ||||||||| |||||||||| |||||||| ||||| ||||||||    
T  8582661 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 8582752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 8635588 - 8635502
Alignment:
Q  126 gcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctca 212  Q
    ||||||||||||| |||||||||  | ||||||||||||||| ||||||||||| || |||| ||||| |||||||| || ||||||    
T  8635588 gcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattgtggatgatctca 8635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 29577102 - 29576992
Alignment:
Q  102 gggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgt 201  Q
    ||||||| |||||| ||||| |||||||||| |||||  |||||| |   |||||||||||| |||| ||||||||||||| | |||||||| |||||||    
T  29577102 gggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctattgccttgatcattgt 29577003  T
Q  202 gaataatctca 212  Q
    | || ||||||    
T  29577002 ggatgatctca 29576992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 8104069 - 8104151
Alignment:
Q  117 tgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcatt 199  Q
    |||||||||||||||||||| | |||||||| |  |||||||||||||||| |||| ||||| ||| |||| ||||| |||||    
T  8104069 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 8546679 - 8546767
Alignment:
Q  117 tgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaat 205  Q
    ||||| || ||||||||||||| || ||||||   ||  |||||||||||| |||||||||| |||||||| ||||| |||||||||||    
T  8546679 tgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 8546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 8382328 - 8382289
Alignment:
Q  117 tgattcttagcagcatcaccaaccaacctttgatcatcag 156  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  8382328 tgattcttagcagcatcaccaaccaacctttgatgatcag 8382289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 8577287 - 8577384
Alignment:
Q  111 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataat 208  Q
    ||||||||||| || |||||||| |||| ||| ||||||  ||  || ||||||||| ||||||| |||||| |||| ||||| |||||||| |||||    
T  8577287 gcagcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataat 8577384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 8016391 - 8016336
Alignment:
Q  117 tgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaaga 172  Q
    |||||||||||||||||||| | |||||||| |  |||||||||||||||| ||||    
T  8016391 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataaga 8016336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 8568836 - 8568903
Alignment:
Q  111 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 178  Q
    ||||||||||| || ||||||||||||| ||| ||||||   | ||||||||||||| ||||||||||    
T  8568836 gcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtgt 8568903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 8572588 - 8572679
Alignment:
Q  111 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtg 202  Q
    ||||||||||| || ||||||||||| | ||| ||||||  || ||| ||||||||| |||| || || ||| |||| ||||||||||||||    
T  8572588 gcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtg 8572679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 8538804 - 8538902
Alignment:
Q  113 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctc 211  Q
    ||||||||| || ||||||||||||| ||| | ||||  || | | ||| ||||| ||||||||||||||||||| ||||| || ||||| || |||||    
T  8538804 agcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctc 8538902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 4677676 - 4677536
Alignment:
Q  79 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 178  Q
    |||||||||| ||| ||||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
T  4677676 atttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgt 4677577  T
Q  179 ggttttgttgccttggtcattgtgaataatctcaactctgt 219  Q
     |||||||||||||| ||||||| ||||||||| |||||||    
T  4677576 tgttttgttgccttgttcattgtaaataatctccactctgt 4677536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 217
Target Start/End: Complemental strand, 34465382 - 34465246
Alignment:
Q  81 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 180  Q
    |||||||||||| |||| |  ||||| || |||| ||||||||||||||||| ||| | ||| |||||||||| ||| ||||||||||||||||||||||    
T  34465382 ttaccaaaaacagtgttctgtgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtgg 34465283  T
Q  181 ttttgttgccttggtcattgtgaataatctcaactct 217  Q
    || |||| ||||||||||||| ||||||||| |||||    
T  34465282 ttgtgttaccttggtcattgtcaataatctctactct 34465246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 15596056 - 15596163
Alignment:
Q  110 ggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatc 209  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||  || |||| |||||||||||||| ||||||    
T  15596056 ggcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatc 15596155  T
Q  210 tcaactct 217  Q
    || |||||    
T  15596156 tcgactct 15596163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 42554320 - 42554185
Alignment:
Q  82 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 181  Q
    ||||||| ||| ||||||  ||||| ||||| | ||||| ||||||||||||||||| |||||||| || || ||| |||||||||||||||||||| ||    
T  42554320 taccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 42554221  T
Q  182 tttgttgccttggtcattgtgaataatctcaactct 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  42554220 tttgttgccttgatcattgtgaataatctcaactct 42554185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 28220950 - 28221048
Alignment:
Q  116 ttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaac 214  Q
    |||||| ||||||||||| |||| |||||||| |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  28220950 ttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaac 28221048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 217
Target Start/End: Complemental strand, 9323217 - 9323062
Alignment:
Q  63 agattatagaaa-agatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaa 161  Q
    |||| ||||||| ||| |||||||||| | | ||||||||||||| || |||| ||||||||||||||||||||||| ||||||||| ||||   |||||    
T  9323217 agataatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaa 9323118  T
Q  162 gcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactct 217  Q
    ||||||||||||||||| |||  ||| ||||| |||||||||||||||||||||||    
T  9323117 gcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactct 9323062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 217
Target Start/End: Complemental strand, 9377696 - 9377541
Alignment:
Q  63 agattatagaaa-agatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaa 161  Q
    |||| ||||||| ||| |||||||||| | | ||||||||||||| || |||| ||||||||||||||||||||||| ||||||||| ||||   |||||    
T  9377696 agataatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaa 9377597  T
Q  162 gcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactct 217  Q
    ||||||||||||||||| |||  ||| ||||| |||||||||||||||||||||||    
T  9377596 gcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactct 9377541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 217
Target Start/End: Complemental strand, 9335188 - 9335034
Alignment:
Q  63 agattatagaaa-agatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaa 161  Q
    |||| ||||||| ||| |||||||||| | | ||||||||||||| || |||| |||||||||||||||||||||| | |||||||| ||||   |||||    
T  9335188 agataatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccatc-aacctttgctcattgttgaaa 9335090  T
Q  162 gcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactct 217  Q
    ||||||||||||||||| |||  ||| ||||| |||||||||||||||||||||||    
T  9335089 gcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactct 9335034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 30776083 - 30776223
Alignment:
Q  79 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 178  Q
    |||||||||| ||| |||||| ||||||  | ||||| || | |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||    
T  30776083 atttaccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaaggtgt 30776182  T
Q  179 ggttttgttgccttggtcattgtgaataatctcaactctgt 219  Q
    | ||||| ||||||  || ||||| ||||| ||||||||||    
T  30776183 gattttgctgccttcatcgttgtggataatttcaactctgt 30776223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 35133452 - 35133546
Alignment:
Q  111 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaat 205  Q
    |||||||||||||||||||||||||| | |||||||||||| | ||||||||||| | |||||||||| |||||||||| ||| || ||||||||    
T  35133452 gcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaat 35133546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 16661170 - 16661062
Alignment:
Q  111 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 210  Q
    |||||||||| |||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||  || ||||| |||||||    
T  16661170 gcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatct 16661071  T
Q  211 caactctgt 219  Q
    |||||||||    
T  16661070 caactctgt 16661062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 43626281 - 43626424
Alignment:
Q  74 aagatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaa 173  Q
    |||| |||||||||| ||| ||||||| ||||  | || |||||||  ||||||||||||||||| ||||||||| || | |||||||| ||||||||||    
T  43626281 aagaaatttaccaaagacagtgttttcggggtcggaggtagcttgacccttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaa 43626380  T
Q  174 ggtgtggttttgttgccttggtcattgtgaataatctcaactct 217  Q
    ||||| ||| |||| |||||||||||||| |||||||| |||||    
T  43626381 ggtgtagttctgtttccttggtcattgtggataatctctactct 43626424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 16656705 - 16656604
Alignment:
Q  110 ggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatc 209  Q
    |||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| ||| |||| || ||||||||||| || |||    
T  16656705 ggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatc 16656606  T
Q  210 tc 211  Q
    ||    
T  16656605 tc 16656604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 12244540 - 12244404
Alignment:
Q  78 tatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtg 177  Q
    ||||||||||| ||| |||||| || ||| |  ||||||||||| ||||||||||||||||  ||||||||||| ||||||||||||||| |||||||||    
T  12244540 tatttaccaaagacagtgttttgagagttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtg 12244441  T
Q  178 tggttttgttgccttggtcattgtgaataatctcaac 214  Q
    | ||| ||||||| || || |||||||| || |||||    
T  12244440 ttgttctgttgccctgatcgttgtgaatgatttcaac 12244404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 7543245 - 7543380
Alignment:
Q  81 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 180  Q
    |||||||| ||| |||||| |||||| |  ||||||||||||||||||  |||||| | |||||| ||||  || ||||||||||||||||||||||| |    
T  7543245 ttaccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttg 7543344  T
Q  181 ttttgttgccttggtcattgtgaataatctcaactc 216  Q
    || ||||||||||||| |||||||| || |||||||    
T  7543345 ttctgttgccttggtcgttgtgaatgatttcaactc 7543380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 12000301 - 12000436
Alignment:
Q  81 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 180  Q
    |||||||||||| |||||| || ||| |  || ||||| || ||||||||||||||||| ||||||||||  ||||||||||||||| ||||||||||      
T  12000301 ttaccaaaaacagtgttttgagagttggcagcggcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgtta 12000400  T
Q  181 ttttgttgccttggtcattgtgaataatctcaactc 216  Q
    ||||||||||||| || |||||||| || |||||||    
T  12000401 ttttgttgccttgatcgttgtgaatgatttcaactc 12000436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 12235796 - 12235901
Alignment:
Q  111 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 210  Q
    |||||||||||||||||||||||||||| |||||| ||||  || |||||||||||||||||||| || ||| | |||||||| || |||||||| ||||    
T  12235796 gcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgtgaatgatct 12235895  T
Q  211 caactc 216  Q
    ||||||    
T  12235896 caactc 12235901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 12258047 - 12257917
Alignment:
Q  82 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 181  Q
    ||||||| ||| ||| || |||||| |  |||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||| ||||||| || ||    
T  12258047 taccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgt 12257948  T
Q  182 tttgttgccttggtcattgtgaataatctca 212  Q
    | |||| ||||| || |||||||| ||||||    
T  12257947 tctgtttccttgatcgttgtgaatgatctca 12257917  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 14705432 - 14705566
Alignment:
Q  82 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 181  Q
    ||||||| ||| |||||  |||||| |  |||||||||||||||||||||||||||| |||||  ||||  || |||||||||||||||||||| || ||    
T  14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
Q  182 tttgttgccttggtcattgtgaataatctcaactc 216  Q
    | | |||||||| || |||||||| || |||||||    
T  14705532 tctattgccttgatcgttgtgaatgatttcaactc 14705566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 43745805 - 43745925
Alignment:
Q  94 tgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttg 193  Q
    |||||| |||||| ||||| | ||||||||||||||| ||||| | |||||||| || |||||| |||||||||||||||   || ||||||||||||||    
T  43745805 tgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaa---gttgttttgttgccttg 43745901  T
Q  194 gtcattgtgaataatctcaactct 217  Q
     |||||||||||||||||||||||    
T  43745902 atcattgtgaataatctcaactct 43745925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 12529868 - 12529960
Alignment:
Q  113 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaat 205  Q
    ||||||||| || ||||||| ||||| ||| || |||  || ||| ||||||||| |||||||||| |||||||| ||||| |||||||||||    
T  12529868 agcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 12529960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 43431028 - 43431096
Alignment:
Q  149 atcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactct 217  Q
    |||||| || |||||||||||| |  |||| ||||| |||||||| |||||||||| ||||| ||||||    
T  43431028 atcatcggtaaaagcaacaaaaaagagtgttgttttattgccttgatcattgtgaaaaatctgaactct 43431096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 28911283 - 28911363
Alignment:
Q  82 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaag 162  Q
    |||| |||||| ||||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  28911283 tacctaaaacagtgttttcggggttggtggcagcctgattcttagcagcatcaccaatcaacctttgatcatcggtgaaag 28911363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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