View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3613_low_34 (Length: 219)

Name: NF3613_low_34
Description: NF3613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3613_low_34
NF3613_low_34
[»] chr2 (3 HSPs)
chr2 (28-201)||(40841458-40841640)
chr2 (28-141)||(40846013-40846126)
chr2 (71-139)||(40852845-40852913)
[»] chr3 (1 HSPs)
chr3 (171-201)||(26809206-26809236)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 40841458 - 40841640
Alignment:
Q  28 gagagtgaaggtgacatgaagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgttttt 127  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40841458 gagaatgaaggtgaaatgaagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgttttt 40841557  T
Q  128 gttgaaa---------aaatggatgtgaatttatagtgcaagagatgtgaaatttatcctcttttatttaggttgccaatttg 201  Q
    |||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40841558 gttgaaaaaatggaagaaatggatgtgaatttatagtgcaagagatgtgaaatttatcctcttttatttaggttgccaatttg 40841640  T

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Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 40846013 - 40846126
Alignment:
Q  28 gagagtgaaggtgacatgaagaagaggaagtgcaaaaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgttttt 127  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40846013 gagagcgaaggtgaaatgaagaagaggaagtgcaacaacattgtaaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgttttt 40846112  T
Q  128 gttgaaaaaatgga 141  Q
    ||||||||||||||    
T  40846113 gttgaaaaaatgga 40846126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 40852845 - 40852913
Alignment:
Q  71 taaaagacagacacattttgaggaaccttaaagatgatgccatgttgttttgtttttgttgaaaaaatg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  40852845 taaaagacagacacattttgaggaaccttaaagatgatgccatgttgccttgtttttgttgaaagaatg 40852913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 26809206 - 26809236
Alignment:
Q  171 tttatcctcttttatttaggttgccaatttg 201  Q
    |||||||||||||||||||||||||||||||    
T  26809206 tttatcctcttttatttaggttgccaatttg 26809236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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