View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_high_1 (Length: 645)
Name: NF3614_high_1
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 17 - 640
Target Start/End: Original strand, 32643300 - 32643923
Alignment:
| Q |
17 |
cataaatacattgcatcagagagcgttgcatatataaatatggtattttactaatataaaaccacaactcgccacatctcactttcttctaacgtccctt |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32643300 |
cataaatacattgcatcagagagcgttgtatatataaatatggtattttactaatataaaaccataactcgccacatctcactttcttctaacgtccctt |
32643399 |
T |
|
| Q |
117 |
taacctgtcatcatcatggataggtctttgttcgtcacacagactcctatcaccactgatgagcttaacattttttaccaaattgatcgtgagctatttt |
216 |
Q |
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|||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32643400 |
taacctgtcatcatcatggataagcctttgtttgtcacacagactcctatcaccactgatgagcttaaccttttttaccaaattgatcgtgagctatttt |
32643499 |
T |
|
| Q |
217 |
gttttttgatcttcaaacttcaccacgaggtgactcaatctcttctagtcatggctctctggctttggcttgaaaaagttgggtaccataaccttgtctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643500 |
gttttttgatcttcaaacttcaccacgaggtgactcaatctcttctagtcatggctctctggctttggcttgaaaaagttgggtaccataaccttgtctc |
32643599 |
T |
|
| Q |
317 |
aaaagtaacagttctacaaggcactgttatcaatgctcttgtgaatgaagctgtaacatgcttgcaaattttgggaaaggatgaacctgccatcccaatt |
416 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643600 |
aaaagtaacacttctacaaggcactgttatcaatgctcttgtgaatgaagctgtaacttgcttgcaaattttgggaaaggatgaacctgccatcccaatt |
32643699 |
T |
|
| Q |
417 |
gggggtggattgcccttgactacaaggctcgtgaaaaaggacatctctcttcagatgttcatcttgaaacggtacacggcaataaccggcataaaaaatg |
516 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
32643700 |
gggggtggattgcccttgaccacaaggctcgtgaaaaaggacatctctcttcagatgttcatcttgaaaaggcacacggcaataaccggcataaaaaatg |
32643799 |
T |
|
| Q |
517 |
ttctaaataacacatgcactcgaatttttaatgatgttttgcagatagttttgaaaagcaaaattatgattgcaacacgaggtaccacatcacgaattca |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643800 |
ttctaaataacacatgcactcgaatttttaatgatgttttgcagatagttttgaaaagcaaaattatgattgcaacacgaggtaccacatcacgaattca |
32643899 |
T |
|
| Q |
617 |
cacactcaatatgcctttgcttct |
640 |
Q |
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||||||||||||||||||| |||| |
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| T |
32643900 |
cacactcaatatgcctttggttct |
32643923 |
T |
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