View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3614_high_10 (Length: 416)

Name: NF3614_high_10
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3614_high_10
NF3614_high_10
[»] chr4 (6 HSPs)
chr4 (19-101)||(20071348-20071426)
chr4 (209-318)||(8011724-8011833)
chr4 (208-295)||(17674107-17674194)
chr4 (177-216)||(12840666-12840705)
chr4 (209-259)||(9014788-9014838)
chr4 (211-292)||(12590864-12590945)
[»] chr1 (1 HSPs)
chr1 (207-318)||(25534676-25534788)
[»] chr6 (3 HSPs)
chr6 (210-316)||(15549529-15549635)
chr6 (211-318)||(33652777-33652884)
chr6 (208-315)||(33656113-33656219)
[»] chr3 (2 HSPs)
chr3 (230-318)||(14183391-14183479)
chr3 (177-293)||(5508289-5508407)
[»] chr5 (4 HSPs)
chr5 (204-260)||(26502100-26502156)
chr5 (208-275)||(18750490-18750557)
chr5 (209-318)||(12822918-12823027)
chr5 (177-214)||(17769505-17769542)
[»] scaffold1122 (1 HSPs)
scaffold1122 (209-318)||(1035-1144)
[»] chr8 (2 HSPs)
chr8 (225-307)||(12657740-12657822)
chr8 (245-318)||(31014179-31014251)
[»] chr2 (1 HSPs)
chr2 (246-295)||(12496274-12496323)
[»] chr7 (1 HSPs)
chr7 (255-295)||(18775843-18775883)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 20071348 - 20071426
Alignment:
Q  19 tagtttgcatgtgtagcatgcatgaacgcattctcgaacaagaaatttctagatagagacattccatgtggactgaatcggtt 101  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20071348 tagtttgcatgtgtagcat----gaacgcattctcgaacaagaaatttctagctagagacattccatgtggactgaatcggtt 20071426  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 8011833 - 8011724
Alignment:
Q  209 tgatggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaactagt 308  Q
    |||||||||||| |  ||||||||||||||||||||||||  |||||||  | ||||||||| |||| ||||  |||||| |||||| ||  ||||||||    
T  8011833 tgatggacaattccagaaagtgtaccaaatcattcacaagagataaagtagtaagtaagatcgtctctacatgtattgtcatttcaactcatcaactagt 8011734  T
Q  309 gttacttatt 318  Q
    ||||||||||    
T  8011733 gttacttatt 8011724  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 17674194 - 17674107
Alignment:
Q  208 ttgatggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaa 295  Q
    ||||||||||||| ||| || | ||||||||  |||||||||||| | ||||| |||||||||||||| ||| |||||||||||||||    
T  17674194 ttgatggacaattccgacaaatataccaaattgttcacaagtaatgaggtgataagtaagatcatctccacagagattgtcgtttcaa 17674107  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 12840666 - 12840705
Alignment:
Q  177 atcaacaatctccgacaatggcgccaaaaatttgatggac 216  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  12840666 atcaacaatccccgacaacggcgccaaaaatttgatggac 12840705  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 9014788 - 9014838
Alignment:
Q  209 tgatggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtga 259  Q
    ||||||||||||| |  ||||| |||| |||||||||||||||||||||||    
T  9014788 tgatggacaattttggcaagtgcaccagatcattcacaagtaataaagtga 9014838  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 12590945 - 12590864
Alignment:
Q  211 atggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgttt 292  Q
    |||||||| ||||| || ||||||||||| || |||||||||||| ||||  |||||||| |||| | | ||||| ||||||    
T  12590945 atggacaaattcgacaattgtaccaaatcgtttacaagtaataaaatgatatgtaagatcgtctccaaaaagattatcgttt 12590864  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 318
Target Start/End: Complemental strand, 25534788 - 25534676
Alignment:
Q  207 tttgatggacaatttcgaaaagtgtaccaaatcattcac-aagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaact 305  Q
    |||||||| |||||||  ||||||| ||||||||||||| ||||||||||||||| ||||||||| | |   ||  |||| ||||||||| |||||||||    
T  25534788 tttgatggccaatttcagaaagtgtgccaaatcattcactaagtaataaagtgataagtaagatcgtatgctcaatgattatcgtttcaattcggcaact 25534689  T
Q  306 agtgttacttatt 318  Q
    || ||||||||||    
T  25534688 agcgttacttatt 25534676  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 316
Target Start/End: Original strand, 15549529 - 15549635
Alignment:
Q  210 gatggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaactagtg 309  Q
    |||| ||||||| || |||||||||||||| |||||||||||||| ||||| | |||||||||||| |||| ||| ||| |||||| |  ||||||||      
T  15549529 gatgaacaattttgacaagtgtaccaaatcgttcacaagtaataatgtgataaataagatcatctccacatggatcgtcatttcaacttagcaactagca 15549628  T
Q  310 ttactta 316  Q
    |||||||    
T  15549629 ttactta 15549635  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 33652884 - 33652777
Alignment:
Q  211 atggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaactagtgt 310  Q
    ||||| |||||||  ||||||| |||||||||||||||||  || || || ||||||||| |||  | | ||||||||||||||| |||||||||||  |    
T  33652884 atggaaaatttcggcaagtgtatcaaatcattcacaagtatcaatgtaataagtaagatcgtcttcatagagattgtcgtttcaactcggcaactagcat 33652785  T
Q  311 tacttatt 318  Q
    ||||||||    
T  33652784 tacttatt 33652777  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 33656219 - 33656113
Alignment:
Q  208 ttgatggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaactag 307  Q
    ||||||||||||||  ||||||| | | |||||||||||| ||||| | |||| || |||||| |||  | | ||||||||||||||| || ||||||||    
T  33656219 ttgatggacaattta-aaaagtgcatcgaatcattcacaattaatacaatgataagaaagatcgtctttatagagattgtcgtttcaactcagcaactag 33656121  T
Q  308 tgttactt 315  Q
     |||||||    
T  33656120 cgttactt 33656113  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 14183479 - 14183391
Alignment:
Q  230 gtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaactagtgttacttatt 318  Q
    |||||||||| ||| |||||||||||||||| ||||  |||||||  | ||| ||||||||||||| ||| ||||||| ||||||||||    
T  14183479 gtaccaaatcgttcgcaagtaataaagtgataagtagaatcatcttcaaataaattgtcgtttcaactcgacaactagcgttacttatt 14183391  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 5508289 - 5508407
Alignment:
Q  177 atcaacaatctccgacaatggcgccaaaaatttgatggacaatttcgaaaagtgtaccaaatca-ttcacaagtaataaagtgatgagtaag-atcatct 274  Q
    |||||||||||| | ||| ||||||||||||||||||| | | || |  ||||||||||||||| ||  |||||||||||||||| ||| || || || |    
T  5508289 atcaacaatctctggcaacggcgccaaaaatttgatggtcgaattaggcaagtgtaccaaatcatttgccaagtaataaagtgataagtgagtataatat 5508388  T
Q  275 caacatagattgtcgtttc 293  Q
    | |||| ||||||||||||    
T  5508389 ccacatggattgtcgtttc 5508407  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 26502100 - 26502156
Alignment:
Q  204 aaatttgatggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgat 260  Q
    |||||||||||||||||||||||||| ||||||| | ||  ||||||||||||||||    
T  26502100 aaatttgatggacaatttcgaaaagtctaccaaaccgttaccaagtaataaagtgat 26502156  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 18750490 - 18750557
Alignment:
Q  208 ttgatggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctc 275  Q
    |||||||| |||||||| | |||||||||||| || ||||||||||||||  | ||||||||| ||||    
T  18750490 ttgatggaaaatttcgacacgtgtaccaaatctttaacaagtaataaagtagtaagtaagatcgtctc 18750557  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 12823027 - 12822918
Alignment:
Q  209 tgatggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaactagt 308  Q
    ||||||||||| | |  ||||||| | ||||||||||||||||||||||  | ||||||| | |||| |||   ||| ||||||||| ||||| |||||     
T  12823027 tgatggacaatcttggcaagtgtatccaatcattcacaagtaataaagtagtaagtaagaccgtctccacaagaattttcgtttcaactcggcgactagc 12822928  T
Q  309 gttacttatt 318  Q
     |||||||||    
T  12822927 attacttatt 12822918  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 17769542 - 17769505
Alignment:
Q  177 atcaacaatctccgacaatggcgccaaaaatttgatgg 214  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  17769542 atcaacaatctccgacaacggcaccaaaaatttgatgg 17769505  T

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Target: scaffold1122 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1122
Description:

Target: scaffold1122; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 1035 - 1144
Alignment:
Q  209 tgatggacaatttcgaaaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaactagt 308  Q
    ||||||||||| | |  ||||||| | ||||||||||||||||||||||  | ||||||| | |||| |||   ||| ||||||||| |||||||||||     
T  1035 tgatggacaatcttggcaagtgtatccaatcattcacaagtaataaagtagtaagtaagaccgtctccacaagaattttcgtttcaactcggcaactagc 1134  T
Q  309 gttacttatt 318  Q
     |||||||||    
T  1135 attacttatt 1144  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 12657822 - 12657740
Alignment:
Q  225 aaagtgtaccaaatcattcacaagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaactag 307  Q
    ||||||||||||||  |||| || |||||||||||| ||||||||  | || ||||  |||||| |||||| |||||||||||    
T  12657822 aaagtgtaccaaattgttcataattaataaagtgataagtaagattgtgtccacatgaattgtcatttcaactcggcaactag 12657740  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 31014179 - 31014251
Alignment:
Q  245 caagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaaatcggcaactagtgttacttatt 318  Q
    |||||||||||||||| ||||||||  |||||||| ||| ||| ||||||| ||| ||||||  ||||||||||    
T  31014179 caagtaataaagtgataagtaagattgtctcaacaaaga-tgttgtttcaactcgacaactaacgttacttatt 31014251  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 12496274 - 12496323
Alignment:
Q  246 aagtaataaagtgatgagtaagatcatctcaacatagattgtcgtttcaa 295  Q
    ||||||||||||||| ||||||||| |||  ||||| |||||||||||||    
T  12496274 aagtaataaagtgataagtaagatcgtctttacataaattgtcgtttcaa 12496323  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 18775883 - 18775843
Alignment:
Q  255 agtgatgagtaagatcatctcaacatagattgtcgtttcaa 295  Q
    |||||| |||||||||||||| ||| |||||||||||||||    
T  18775883 agtgataagtaagatcatctccacaaagattgtcgtttcaa 18775843  T

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