View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_high_11 (Length: 413)
Name: NF3614_high_11
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 145 - 406
Target Start/End: Original strand, 33021023 - 33021284
Alignment:
| Q |
145 |
ttcatcgtggttacgacatgtggaataatgtgatgacaaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgttgtt |
244 |
Q |
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| T |
33021023 |
ttcatcgtggttacgacatgtggaataatgtgatgacaaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgttgtt |
33021122 |
T |
|
| Q |
245 |
atatgattgccttctgtttctacataatttcatgtattatgtcagagtctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctata |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33021123 |
atatgattgccttctgtttctacataatttcatgtattatgtcagagcctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctata |
33021222 |
T |
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| Q |
345 |
agagcctcttgatttgattgtgtttttactatcaagtaacgtaagattttatatattcttcg |
406 |
Q |
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| T |
33021223 |
agagcctcttgatttgattgtgtttttactatcaagtaacgtaagattttatatattgttcg |
33021284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 145 - 399
Target Start/End: Original strand, 33038929 - 33039183
Alignment:
| Q |
145 |
ttcatcgtggttacgacatgtggaataatgtgatga-caaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgttgt |
243 |
Q |
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| T |
33038929 |
ttcatcgtggttacgacatgtggaata-tgtgaccaacaaggtaagttatggttcttggaaacctcgcttaattgatgattattaagagcctcttgttgt |
33039027 |
T |
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| Q |
244 |
tatatgattgccttctgtttctacataatttcatgtattatgtcagagtctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctat |
343 |
Q |
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| T |
33039028 |
catatgatttccttctgtttgtacataattgcatgtattatgttagagcctcttgttgtcattcaaagaaaacacaagtaaagaaagaaaatttatctat |
33039127 |
T |
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| Q |
344 |
aagagcctcttgatttgattgtgtttttactatcaagtaacgtaagattttatata |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
33039128 |
aagagcctcttgatttgattgtgtttttactatcaagtaacctaagattttgtata |
33039183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 33019620 - 33019766
Alignment:
| Q |
1 |
cactcaccatcgtctcatgctaagctctcgcaacgacttagacaagttagttctctttgattccccaatgctctctgattttccaacgtttactgtcaaa |
100 |
Q |
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| T |
33019620 |
cactcgccatcgtctcatgctaagctctcgcaacgacttagacgagttagttctctttgattccccaatgccctctgattttccaacgtttactgtcaaa |
33019719 |
T |
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| Q |
101 |
caaacacaagtcagttaccctgattgtctcaaaattgaatatgattc |
147 |
Q |
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| T |
33019720 |
caaacacaagtcagttaccctgattgtctcaaaattgaatatgattc |
33019766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 33026021 - 33026163
Alignment:
| Q |
5 |
caccatcgtctcatgctaagctctcgcaacgacttagacaagttagttctctttgattccccaatgctctctgattttccaacgtttactgtcaaacaaa |
104 |
Q |
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||||| |||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| |||| |||| |
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| T |
33026021 |
caccaccgtctcatgctaagctctaccaacgagttagacgagttagttctctttgattccccgatgccctctgattttccaacgtttactatcaaccaaa |
33026120 |
T |
|
| Q |
105 |
cacaagtcagttaccctgattgtctcaaaattgaatatgattc |
147 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33026121 |
cacaactcagttaccctgattgtctcaaaattgaatatgattc |
33026163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 33037526 - 33037660
Alignment:
| Q |
13 |
tctcatgctaagctctcgcaacgacttagacaagttagttctctttgattccccaatgctctctgattttccaacgtttactgtcaaacaaacacaagtc |
112 |
Q |
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||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| || || |||||| || |
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| T |
33037526 |
tctcatgttaagctctaataacgacttagacgagttagttctctttgattccccaatgccctctgattttccaacgtttactgtaaaccagacacaactc |
33037625 |
T |
|
| Q |
113 |
agttaccctgattgtctcaaaattgaatatgattc |
147 |
Q |
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| T |
33037626 |
agttaccctgattgtctcaaaattgaatatgattc |
33037660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 288 - 401
Target Start/End: Original strand, 33027433 - 33027546
Alignment:
| Q |
288 |
agagtctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctataagagcctcttgatttgattgtgtttttactatcaagtaacgta |
387 |
Q |
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|||| |||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
33027433 |
agagcctcttgttatcattcaaagaatacacaagcaaataaagaaaatttatctataagagcctcttgatttgattgtgcttttactatcaagtaaccta |
33027532 |
T |
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| Q |
388 |
agattttatatatt |
401 |
Q |
| |
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||||| | |||||| |
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| T |
33027533 |
agattctgtatatt |
33027546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 33027356 - 33027445
Alignment:
| Q |
151 |
gtggttacgacatgtggaataatgtgatgacaaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgtt |
241 |
Q |
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||||||||| |||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33027356 |
gtggttacggcatgaagaata-tgtgataacaaggtaaattatggatctcggaaacctctcttaattaatgattattaagagcctcttgtt |
33027445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 33023621 - 33023741
Alignment:
| Q |
21 |
taagctctcgcaacgacttagacaagttagttctctttgattccccaatgctctctgattttccaacgtttactgtcaaacaaacacaagtcagttaccc |
120 |
Q |
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|||||||| ||||||||||| |||||||||||| |||||||| || || | |||| || ||||||||||| ||| |||||||| |||||||||| |
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| T |
33023621 |
taagctctaccaacgacttaggggagttagttctctatgattcccgaaggccttgtgatatttcaacgtttactatcacgcaaacacagctcagttaccc |
33023720 |
T |
|
| Q |
121 |
tgattgtctcaaaattgaata |
141 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
33023721 |
taattgtctcaaaattgaata |
33023741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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