View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_high_16 (Length: 331)
Name: NF3614_high_16
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 22755111 - 22755285
Alignment:
| Q |
33 |
gtccctagatgaaatgacaaacacttgaaattcacagaaatgcaatctcatgaatttgaccctgattgaaagtgttcagattaacaacgttgacaatgat |
132 |
Q |
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| T |
22755111 |
gtccctagatgaaatgacaaacacttgaaattcacagaaatgcaatctcctgaatttgaccctgattgaaagtgttcagattaacaacgttgacaatgat |
22755210 |
T |
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| Q |
133 |
tgttacctaagtttttacggacaaattctggaatatttatgatatagctaacatatataataaataacatgtgtgatg |
210 |
Q |
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| T |
22755211 |
tgttacctaag-ttttacggacaaattctggaatatttatgatatagttaac--atataataaataacatgtgtgatg |
22755285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 22755272 - 22755355
Alignment:
| Q |
228 |
taacatgtgtgatgagtgtgacagaaaatttgtgcatatgcaatgaagaatgcgtttggaattttattagacccacatgcaaat |
311 |
Q |
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| T |
22755272 |
taacatgtgtgatgagtgtgacagaaaatttgttcatatgcaataaagaatgcgtttggaattttattagacccacatgcaaat |
22755355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 22752810 - 22752924
Alignment:
| Q |
93 |
cctgattgaaagtgttcagattaacaacgttgacaatgattgttacctaagtttttacggacaaattctggaatatttatgatatagctaacatatataa |
192 |
Q |
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| T |
22752810 |
cctggttgaaagtgttcagattaagaacatcgacgatgactgctgccaaagttat-acggacaaattctgacatatttatgatatagctaac--atataa |
22752906 |
T |
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| Q |
193 |
taaataacatgtgtgatg |
210 |
Q |
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| T |
22752907 |
taaataacatgtgtgatg |
22752924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 22752911 - 22752975
Alignment:
| Q |
228 |
taacatgtgtgatgagtgtgacagaaaatttgtgcatatgcaatgaagaatgcgtttggaatttt |
292 |
Q |
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||||||||||||||| ||||| ||||||||||||||| |||||| |||||||||||| ||||||| |
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| T |
22752911 |
taacatgtgtgatgaatgtgaaagaaaatttgtgcatgtgcaataaagaatgcgtttagaatttt |
22752975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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