View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3614_high_20 (Length: 301)
Name: NF3614_high_20
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 30463862 - 30463599
Alignment:
| Q |
21 |
ttgtagtactccccattgaaaaactctccatctcttcttggcttccatctttggtagtgttcctcaatggtgacagtactgcaagcatcaataataattc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30463862 |
ttgtagtactccccattgaaaaactctccatctcttcttggcttccatctttggtagtgttcctcaatggtgacagtactgcaagcatcaataataattc |
30463763 |
T |
|
| Q |
121 |
tagatccacactcaagcactcaactttctaataataacaaaatgggaaactcaatatgtaaagctaggtgaattattatttttggttgcacgttaagcaa |
220 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
30463762 |
tagatccacactcaagtactcaactttctaataataacaaaatgggaaactcaatatgtaaagctaggtgaattattatctttggttgcacattaagcaa |
30463663 |
T |
|
| Q |
221 |
tgcttattatgtacatgaaaattgag-nnnnnnnntgagaaaagcttagaaatggtatagggtttat |
286 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30463662 |
tgc---ttatgtacatgaaaattgagaaaaaaaaatgagaaaagcttagaaatggtatagggtttat |
30463599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University