View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_high_27 (Length: 249)
Name: NF3614_high_27
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 46304097 - 46303865
Alignment:
| Q |
1 |
agttgcttcagctttgatatggagaaaggtatatcaccataaagttgattatcagataaatcccttcaaattcaattaaaaaataagcaatataattagc |
100 |
Q |
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| T |
46304097 |
agttgcttcagctttgatatggagaaaggtatatcaccataaagttgattatcagataaatcccttcaaattcaattaaaaaataagcaatataattagc |
46303998 |
T |
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| Q |
101 |
acttgtatcgcaaggaaaactccagcacaataattaataaagtagataaaagaaacaagacaagagtcatacaggtgaaaaagtgcaccacagttcccaa |
200 |
Q |
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| T |
46303997 |
acttgtatcgcaaggaaaactccagcacaataattaataaagtagataaaagaaacaagacaagagtcatacaggtgaaaaagtgcaccacagttcccaa |
46303898 |
T |
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| Q |
201 |
tttcatctgggatttgaccagttagtttattcc |
233 |
Q |
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| T |
46303897 |
tttcatctgggatttgaccagttagtttattcc |
46303865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6544644 - 6544572
Alignment:
| Q |
1 |
agttgcttcagctttgatatggagaaaggtatatcaccataaagttgattatcagataaatcccttcaaattca |
74 |
Q |
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| T |
6544644 |
agttgcttcatctttgatatggaaaaatgtatatcaccataaaggtg-ttgtgggataagtcccttcaaattca |
6544572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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