View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_high_3 (Length: 599)
Name: NF3614_high_3
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Complemental strand, 42740716 - 42740148
Alignment:
| Q |
18 |
taaacaaatagtagctagttaaatattgggttaccttcactaagacgtgagtgattctattggcttgtcttagagtaaactcaacatgatagttttgaaa |
117 |
Q |
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| T |
42740716 |
taaacaaatgggagctagctaaatattgggttaccttcactaagacatgagcgatcacattggcttgcctttgagtaaactcgacatgatagttttaaaa |
42740617 |
T |
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| Q |
118 |
aaataaattacaaaattgtttacaaccattaatgatacttccgaatgcagtannnnnnnnnngcttcctcctcaaaaagaatcaaccacctttttt-aat |
216 |
Q |
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| T |
42740616 |
aaataaattacaaaaaattttacaaccattaatgatacttccgaatgcagaattttttt---gcttcctccttaaaaagaatcaaccacctttttttaat |
42740520 |
T |
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| Q |
217 |
aaagagtgaaaaccatgttatctagt--aaggtcaaacacccataatatagccatataaagcctcaatgctttcccaacctccacaaaacacaacgggga |
314 |
Q |
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| T |
42740519 |
aaagagtgaaaaccatgttatcttgttgaaggtcaaacacccataatatagccagataaagcctcaatgctttcccaacctccacaaaacacaacgggga |
42740420 |
T |
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| Q |
315 |
gagccaaagggtctttgcaaacacaaagcttctatttttcttgcgaatacacataacaatccccaacttgttttgagaggagggaaatgaggcatctat- |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42740419 |
gagccaaagggtctttgcaaacacaaagcttctatttttcttgcgaatacacataccaatccccaacttgttttgagaggagggaaatgaggcatctatg |
42740320 |
T |
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| Q |
414 |
-tgcatttatatcttcatggatccagtttcaaccacctctataaagcttcattattcggtctcatgttcttactctttcataatcttcacaaaatagttg |
512 |
Q |
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| T |
42740319 |
ttgcatttatatcttcatggatccggtttcaaccacctctgtaaagcttcattattcggtctcatgttcttactctttcataatcttcacaaaatagttg |
42740220 |
T |
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| Q |
513 |
caaaatgttcactttgagatgcatgaaagcattgcaacaataggataataacctcatccatactagtacaat |
584 |
Q |
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| T |
42740219 |
caaaatgttcactttgagatgcatgaaagcattgcaacaataggataataacctcatccatactagtacaat |
42740148 |
T |
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