View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_high_5 (Length: 455)
Name: NF3614_high_5
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 49 - 439
Target Start/End: Original strand, 48037311 - 48037701
Alignment:
| Q |
49 |
ttagcatcagatcaacaccatccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttc |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48037311 |
ttagcatcagatcaacaccatccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttc |
48037410 |
T |
|
| Q |
149 |
tttgctttagaatgctttacaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48037411 |
tttgctttagaatgctttacaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattg |
48037510 |
T |
|
| Q |
249 |
atggattccagtcccctgaagaaaagaaagctaannnnnnnnaaatcaatcaatagcttggctagaaaagctactaacgtcttttatgtaatatctatga |
348 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48037511 |
atggattccagtcccctgaagaaaagaaagctaattttttttaaatcaatcaatagcttggctagaaaagctactaacgtcttttatgtaatatctatga |
48037610 |
T |
|
| Q |
349 |
taatgatcctagaaatggagatagtcctgatgctaaacttaaagacattttaattgaaaaatcgcccattatagaattgaatctcacattt |
439 |
Q |
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| T |
48037611 |
taatgatcctagaaatggagatagtcttgatgctaaacttaaagacattttaattgaaaaatcgcccattatagaattgaatctcacattt |
48037701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 67 - 261
Target Start/End: Original strand, 48056596 - 48056785
Alignment:
| Q |
67 |
catccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttt |
166 |
Q |
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||||||| | ||||| ||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||| |||||||||| |||||||| ||| |
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| T |
48056596 |
catcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagaatcctagggcagaag-ttgagagcttcagttctttgcgttagaatgtttt |
48056694 |
T |
|
| Q |
167 |
acaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtc |
261 |
Q |
| |
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||||| |||| |||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||| || |||| ||||| |
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| T |
48056695 |
acaaaccaacaaataactgagtc----gatgttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtc |
48056785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 67 - 266
Target Start/End: Original strand, 48043378 - 48043572
Alignment:
| Q |
67 |
catccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttt |
166 |
Q |
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||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||||||| ||| |
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| T |
48043378 |
catcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaag-ttgagagcttcagttgtttgctttagaatgtttt |
48043476 |
T |
|
| Q |
167 |
acaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtcccctg |
266 |
Q |
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| T |
48043477 |
acaaaccgacaaattactgagtc----aatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctg |
48043572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 83 - 244
Target Start/End: Original strand, 48045203 - 48045356
Alignment:
| Q |
83 |
ttgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttag---aatgctttacaaatcaactaa |
179 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||| |||| |||||||| |||| | |
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| T |
48045203 |
ttgatatcaatctgcaatgcaacattcaaatagattcatagggcaggag-ttgag------agttctttgctttagaaaaatgttttacaaagcaacgca |
48045295 |
T |
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| Q |
180 |
taactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttc |
244 |
Q |
| |
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|||||||| | |||||||||| ||||||||||||||| | |||||||| |||||||| |||| |
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| T |
48045296 |
taactgagcc----aatgttggtgtagtttttacatgagaccgtgaagcaataaacttctttttc |
48045356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 48051336 - 48051419
Alignment:
| Q |
83 |
ttgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttta |
167 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||||| | |||| || |||||||||| | || |||||||||||||| |||| |
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| T |
48051336 |
ttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagag-ttgagagcttcaattgtttgctttagaatgtttta |
48051419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 5317100 - 5317146
Alignment:
| Q |
195 |
atgttggtgaagtttttacatgagatcatgaagcaacaaacttctct |
241 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
5317100 |
atgttggttgagtttttgcatgagatcatgaagcaacaaacttctct |
5317146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 439
Target Start/End: Original strand, 24207626 - 24207676
Alignment:
| Q |
389 |
aaagacattttaattgaaaaatcgcccattatagaattgaatctcacattt |
439 |
Q |
| |
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||||||||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
24207626 |
aaagacattttaattgaaaaagggcctattagggaattgaatctcacattt |
24207676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 29540661 - 29540613
Alignment:
| Q |
391 |
agacattttaattgaaaaatcgcccattatagaattgaatctcacattt |
439 |
Q |
| |
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||||||||||||||||| || || |||| ||||||||||||||||||| |
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| T |
29540661 |
agacattttaattgaaatatgacctattagagaattgaatctcacattt |
29540613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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