View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3614_high_7 (Length: 426)
Name: NF3614_high_7
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 406
Target Start/End: Complemental strand, 42158998 - 42158598
Alignment:
| Q |
6 |
tgataagaagatcttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttgtctct |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158998 |
tgataagaagatcttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttgtctct |
42158899 |
T |
|
| Q |
106 |
ttatctttagatttggattttatatcgaacaaccaactagtggttggacggaccatatatactttggttcgtcaaaccacatagatttcttagaaattag |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158898 |
ttatctttagatttggattttatatcaaacaaccaactagtggttgaacggaccatatatactgtggttcgtcaaaccacatagatttcttagaaattag |
42158799 |
T |
|
| Q |
206 |
tggtctgacttactgcgacaggtggtttgtcaaaccatggttggttgttgctcaatgtccaacggctaattactgtttggatggacaaaccaaaagagag |
305 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158798 |
tggtctgacttactacgataggtggtttgtcaaaccatggttggttgttggtcaatgtccaacggctaattactgtttggatggacaaaccaaaagagag |
42158699 |
T |
|
| Q |
306 |
aatccacgttgataatctattatcatagcaacatcattcatgaatcatgataatcattgcttgaaaaagttgaaataacatataaacttagagacagaaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158698 |
aatccacgttgataatctattatcatagcaacatcattcatgaatcatgataatcattgcttgaaaaagttgaaataacatataaacttagagacagaaa |
42158599 |
T |
|
| Q |
406 |
a |
406 |
Q |
| |
|
| |
|
|
| T |
42158598 |
a |
42158598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 42146692 - 42146585
Alignment:
| Q |
17 |
tcttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttgtctctttatctttaga |
116 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
42146692 |
tcttgttggatagcatccttaagattgtcgaagaagacaatgagaagtttctcagaaaacttagagaccgacaagacaggtttgtctctttatctttata |
42146593 |
T |
|
| Q |
117 |
tttggatt |
124 |
Q |
| |
|
||| |||| |
|
|
| T |
42146592 |
ttttgatt |
42146585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 42179961 - 42179878
Alignment:
| Q |
17 |
tcttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttg |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
42179961 |
tcttgttggatagcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttg |
42179878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University