View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3614_high_9 (Length: 420)

Name: NF3614_high_9
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3614_high_9
NF3614_high_9
[»] chr7 (5 HSPs)
chr7 (23-220)||(35629332-35629530)
chr7 (265-410)||(35629575-35629722)
chr7 (23-189)||(35635752-35635918)
chr7 (265-408)||(35635993-35636136)
chr7 (265-410)||(35632731-35632876)
[»] chr3 (7 HSPs)
chr3 (276-410)||(10299123-10299257)
chr3 (276-410)||(10319555-10319689)
chr3 (276-410)||(10336671-10336805)
chr3 (276-374)||(10338459-10338557)
chr3 (87-177)||(10299366-10299456)
chr3 (87-177)||(10319798-10319888)
chr3 (87-177)||(10336914-10337004)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 9e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 35629332 - 35629530
Alignment:
Q  23 cagattagcatgcatcatgttattacaggtaacattcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatc 122  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  35629332 cagattagcatgcatcatgctattacaggtaacattcccattagcagccgctttcgctagaacagtactcacaagcctttttgcaattccctgcaaaatc 35629431  T
Q  123 caccaaagc--ataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtctttgatgcnnnnnnncacaaatacttattttcattttat 220  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  35629432 caccaaagcatataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtctttgatgc-aaaaaacacaaatacttattttcattttat 35629530  T

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Target: chr7; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 265 - 410
Target Start/End: Original strand, 35629575 - 35629722
Alignment:
Q  265 tcatagaaatcgatat--atacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 362  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629575 tcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 35629674  T
Q  363 atataagaaactcgtcactatatgttaaaactctagtacgcatctctg 410  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  35629675 atataagaaacttgtcactatatgttaaaactctagtacgcatctctg 35629722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 35635752 - 35635918
Alignment:
Q  23 cagattagcatgcatcatgttattacaggtaacattcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatc 122  Q
    ||||||||||| | ||||| ||||| |||||  ||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||      
T  35635752 cagattagcattcttcatggtattataggtagaattcctattagcagccgcttgtgctagaacagtactcacaagcctttttgcaattccctgaaaaaat 35635851  T
Q  123 caccaaagcataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtctttgatgc 189  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35635852 caccatagcataactaaatcaaaagccagcaaacataacagtaatgactcaaattcgtctttgatgc 35635918  T

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Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 265 - 408
Target Start/End: Original strand, 35635993 - 35636136
Alignment:
Q  265 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 364  Q
    ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35635993 tcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 35636092  T
Q  365 ataagaaactcgtcactatatgttaaaactctagtacgcatctc 408  Q
    || |||||||  ||  | | ||||||| |||||| |||||||||    
T  35636093 atcagaaacttatcgttctctgttaaatctctagaacgcatctc 35636136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 265 - 410
Target Start/End: Original strand, 35632731 - 35632876
Alignment:
Q  265 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 364  Q
    ||||||| || ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| ||||||    
T  35632731 tcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaat 35632830  T
Q  365 ataagaaactcgtcactatatgttaaaactctagtacgcatctctg 410  Q
    ||||||||||  ||| | | ||||||||||||||||  ||||||||    
T  35632831 ataagaaacttatcattctctgttaaaactctagtaaacatctctg 35632876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 410
Target Start/End: Complemental strand, 10299257 - 10299123
Alignment:
Q  276 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 375  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10299257 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt 10299158  T
Q  376 gtcactatatgttaaaactctagtacgcatctctg 410  Q
     ||| ||| |||||||||||||||| |||||||||    
T  10299157 atcattatctgttaaaactctagtatgcatctctg 10299123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 410
Target Start/End: Complemental strand, 10319689 - 10319555
Alignment:
Q  276 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 375  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10319689 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10319590  T
Q  376 gtcactatatgttaaaactctagtacgcatctctg 410  Q
     ||| ||| |||||||||||||||| |||||||||    
T  10319589 atcattatctgttaaaactctagtatgcatctctg 10319555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 410
Target Start/End: Complemental strand, 10336805 - 10336671
Alignment:
Q  276 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 375  Q
    ||||||||| ||||||||| ||||| ||| ||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10336805 gatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10336706  T
Q  376 gtcactatatgttaaaactctagtacgcatctctg 410  Q
     ||| ||| |||||||||||||||| |||||||||    
T  10336705 atcattatctgttaaaactctagtatgcatctctg 10336671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 374
Target Start/End: Complemental strand, 10338557 - 10338459
Alignment:
Q  276 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaact 374  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| |||| ||||||||| ||||||    
T  10338557 gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaact 10338459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 10299456 - 10299366
Alignment:
Q  87 gtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaatgactcaaatt 177  Q
    ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| ||||||||||    
T  10299456 gtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt 10299366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 10319888 - 10319798
Alignment:
Q  87 gtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaatgactcaaatt 177  Q
    ||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| ||||||||||    
T  10319888 gtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt 10319798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 10337004 - 10336914
Alignment:
Q  87 gtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaatgactcaaatt 177  Q
    ||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| ||||||||||    
T  10337004 gtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt 10336914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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