View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_low_12 (Length: 410)
Name: NF3614_low_12
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 124 - 315
Target Start/End: Complemental strand, 22753945 - 22753753
Alignment:
| Q |
124 |
ggataagtgaaggatttcaaatttaaaactttggtctttgcatatcaatcttcttcaatatttttacatctatcaattgtccttacacctctcgtaaatg |
223 |
Q |
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| T |
22753945 |
ggataagtgaaggatttcaaatttaaaactttggtctttgcatatcaatcttcttcaatttttttacaactatcaattgtccttacacctctcgtaaatg |
22753846 |
T |
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| Q |
224 |
tcttatgtgtagctcaatcactttaaattgaaatgtccaaattcaattattttattttatcaagt-aataataataaaggtcatgctaacaaa |
315 |
Q |
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| T |
22753845 |
tcttatgtgtagctcaatcactttaaattgaaatgtccaaattcaattatttaattttatcaagtaaataataataaaggtcatgctaacaaa |
22753753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 22753755 - 22753705
Alignment:
| Q |
345 |
aaaagaaaacaattactaggttttatatcaacaaaaatttctttttaatac |
395 |
Q |
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| T |
22753755 |
aaaagaaaacaattactaggttttatatcaacaaaaatttctttttaatac |
22753705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 22754877 - 22754816
Alignment:
| Q |
34 |
gctcttcttccagtacattttgctcgcgtccaactgaacttcccaaaatactcttgtgtgtt |
95 |
Q |
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| T |
22754877 |
gctcttctcccaacacattttgctcgcgttcaactgaacttcccaaaatattcttgcgtgtt |
22754816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 39926356 - 39926405
Alignment:
| Q |
34 |
gctcttcttccagtacattttgctcgcgtccaactgaacttcccaaaata |
83 |
Q |
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| T |
39926356 |
gctcttctcccaacacattttgctcgcgtcaaactgaacttctcaaaata |
39926405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 34328723 - 34328687
Alignment:
| Q |
51 |
ttttgctcgcgtccaactgaacttcccaaaatactct |
87 |
Q |
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| T |
34328723 |
ttttgttcgcgtccaactgaacttcccaaaatactct |
34328687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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