View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_low_13 (Length: 401)
Name: NF3614_low_13
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 5815652 - 5815878
Alignment:
| Q |
18 |
gctttgtacatttaaagatatatacattctttcataatacgtcacactttgttagtgggttgcaatgtcactaga-tacaatgccgaatcctatcgtgaa |
116 |
Q |
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| T |
5815652 |
gctttgtacatttaaagatatatacattctttcataatacgtcacactttgttagtgggttgcaatgtcactagaatacaatgccgaatcctatcgtgaa |
5815751 |
T |
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| Q |
117 |
tatgtcctttcccacctctccaccatcatcaccaccacctctggcttcaccactgccttctcatcacaatcatccatatctcatgattttcatatgatca |
216 |
Q |
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| T |
5815752 |
tatgtcctttcccccctctccaccatcatcaccaccacctctggcttcaccactgccttctcatcacaatcatccacatctcatgattttcatatgatca |
5815851 |
T |
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| Q |
217 |
attttacttggactggcagccttcgtc |
243 |
Q |
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| T |
5815852 |
attttacttggactggcagccttcgtc |
5815878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 5815924 - 5816025
Alignment:
| Q |
289 |
aatctagtttgtgcagcttacattggtttcggtgtgcttgggggtgtttaagtactcaaggtaattttcatatttattattaattgtctaatttgatttc |
388 |
Q |
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| T |
5815924 |
aatctagtttgtgcagctttcattggtttcggtg--cttgggggtgtttaagtactcaaggtaattttcatatttattattaattgtctaatttgatttc |
5816021 |
T |
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| Q |
389 |
ttct |
392 |
Q |
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|||| |
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| T |
5816022 |
ttct |
5816025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 5815294 - 5815361
Alignment:
| Q |
18 |
gctttgtacatttaaagatatatacattctttcataatacgtcacactttgttagtgggttgcaatgt |
85 |
Q |
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| T |
5815294 |
gctttgtacatttaaagaaatacacattctttcataataagtcacactttattagagggttgcaatgt |
5815361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 5797813 - 5797860
Alignment:
| Q |
40 |
tacattctttcataatacgtcacactttgttagtgggttgcaatgtca |
87 |
Q |
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| T |
5797813 |
tacattctttcattataagtcacactttgttagggggttgcaatgtca |
5797860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 5795685 - 5795615
Alignment:
| Q |
18 |
gctttgtacatttaaa-gatatatacattctttcataatacgtcacactttgttagtgggttgcaatgtca |
87 |
Q |
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| T |
5795685 |
gctttgtacatttaaaagatttatagattcttttgtaataagtcacactttgttagggggttgtaatgtca |
5795615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 5828219 - 5828175
Alignment:
| Q |
43 |
attctttcataatacgtcacactttgttagtgggttgcaatgtca |
87 |
Q |
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| T |
5828219 |
attctttcatgataagtcacactttgttaatgggttgcaatgtca |
5828175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 5772380 - 5772334
Alignment:
| Q |
40 |
tacattctttcataatacgtcacactttgttagtgggttgcaatgtca |
87 |
Q |
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||||||||||||||||| |||||||||| |||| |||||||||||||| |
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| T |
5772380 |
tacattctttcataataagtcacactttattag-gggttgcaatgtca |
5772334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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