View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3614_low_17 (Length: 323)

Name: NF3614_low_17
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3614_low_17
NF3614_low_17
[»] chr1 (8 HSPs)
chr1 (152-314)||(35998085-35998247)
chr1 (19-161)||(35998428-35998570)
chr1 (144-284)||(9607557-9607698)
chr1 (207-284)||(2990582-2990659)
chr1 (150-283)||(43292746-43292879)
chr1 (214-283)||(8876287-8876356)
chr1 (154-199)||(14248191-14248236)
chr1 (207-283)||(7451475-7451551)
[»] chr7 (4 HSPs)
chr7 (148-282)||(10201376-10201510)
chr7 (144-265)||(27933478-27933599)
chr7 (165-218)||(3946998-3947051)
chr7 (165-264)||(4613722-4613820)
[»] chr3 (5 HSPs)
chr3 (149-278)||(48847594-48847723)
chr3 (233-282)||(16118517-16118566)
chr3 (233-280)||(19322414-19322461)
chr3 (208-283)||(45675730-45675805)
chr3 (201-283)||(622011-622093)
[»] chr6 (2 HSPs)
chr6 (144-282)||(32312832-32312970)
chr6 (149-222)||(6368742-6368815)
[»] chr5 (6 HSPs)
chr5 (152-280)||(3745213-3745341)
chr5 (167-284)||(12429755-12429873)
chr5 (150-279)||(37060269-37060398)
chr5 (151-246)||(17759319-17759414)
chr5 (202-264)||(27475352-27475414)
chr5 (233-283)||(15150807-15150857)
[»] scaffold0065 (1 HSPs)
scaffold0065 (143-283)||(49460-49600)
[»] scaffold0095 (1 HSPs)
scaffold0095 (201-284)||(37865-37948)
[»] scaffold0020 (1 HSPs)
scaffold0020 (143-262)||(155159-155278)
[»] chr8 (3 HSPs)
chr8 (201-284)||(39396853-39396936)
chr8 (152-283)||(41146158-41146289)
chr8 (147-221)||(29471776-29471850)
[»] chr2 (1 HSPs)
chr2 (208-283)||(36639053-36639128)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 152 - 314
Target Start/End: Complemental strand, 35998247 - 35998085
Alignment:
Q  152 tgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcgct 251  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  35998247 tgtttgatttcccgtttgcaatacacaaaagcacgtttgcatgcttcctgatgcgtttttgtcgtgatttttagaagctccaaatactaacttcttcgct 35998148  T
Q  252 aacgtgattttttgtcgtgatttccatcaaacatcataccaaacagacgctaaatcttcatct 314  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  35998147 aacgtaattttttgtcgtgatttccatcaaacaccgtaccaaacagacgctaaatcttcatct 35998085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 35998570 - 35998428
Alignment:
Q  19 ccatgctccaatctccacctcctcaaccccaactccaccttcaccatcaacaccaacaggtattattaatttttattcnnnnnnnnnnnnnngacaaata 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||              ||||||||    
T  35998570 ccatgctccaatctccacctcctcaaccccaactccaccttcaccatcaacaccaacaggtattattaatatttattc-tttttttttttgtgacaaata 35998472  T
Q  119 ttaata-tttattcttataaatcatataagcgtgtgtttgattt 161  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  35998471 ttaatattttattcttataaatcatataagcgtgtgtttgattt 35998428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 284
Target Start/End: Original strand, 9607557 - 9607698
Alignment:
Q  144 taagcgtgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaact 243  Q
    |||| ||||||||| ||| |||||||| | ||||||||||| ||||||| | |||   | ||||||||| ||| |||||||||| ||| |||||||||||    
T  9607557 taagtgtgtgtttggtttcccgtttgcgacacacaaaagcacgtttgcatgtttctcaacgtgtttttgccgtaatttttagaagctctaaatactaact 9607656  T
Q  244 tcttcgctaacgt-gattttttgtcgtgatttccatcaaaca 284  Q
    |||| |||||||| | ||||||| |||||||| |||||||||    
T  9607657 tctttgctaacgtggtttttttgccgtgattttcatcaaaca 9607698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 2990659 - 2990582
Alignment:
Q  207 tttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaaca 284  Q
    |||||||||||||||| |||| ||  ||||||||||||||| | ||| ||| |||||| ||||||||| |||||||||    
T  2990659 tttttgtcgtgattttcagaagctacaaatactaacttctttgttaatgtggttttttatcgtgattttcatcaaaca 2990582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 43292879 - 43292746
Alignment:
Q  150 tgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcg 249  Q
    |||||||| ||| | |||||||  ||||||||||| ||||||| | || | | | |||||||  ||||||||| |||| ||| |||||||||||| | ||    
T  43292879 tgtgtttggtttcctgtttgcaccacacaaaagcacgtttgcatgttttcgggtatgtttttaccgtgattttcagaagctccaaatactaacttttacg 43292780  T
Q  250 ctaacgtgattttttgtcgtgatttccatcaaac 283  Q
     |||| || ||||||  |||||||||||||||||    
T  43292779 ttaacatggttttttaccgtgatttccatcaaac 43292746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 8876287 - 8876356
Alignment:
Q  214 cgtgatttttagaatctcaaaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaac 283  Q
    ||||||||| |||| ||  |||||||||||| | |||||||||| || ||| ||||||| ||||||||||    
T  8876287 cgtgattttcagaaactttaaatactaacttttacgctaacgtggttgtttatcgtgatatccatcaaac 8876356  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 14248191 - 14248236
Alignment:
Q  154 tttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcc 199  Q
    |||||||| |||||||||| ||| |||||||||||||||| |||||    
T  14248191 tttgatttcccgtttgcaaaacataaaagcatgtttgcacacttcc 14248236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 7451551 - 7451475
Alignment:
Q  207 tttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaac 283  Q
    ||||||||||  ||| ||||| ||| |||||||||||| |    ||||||||||||||||||| |||| ||||||||    
T  7451551 tttttgtcgtactttctagaagctccaaatactaacttttatattaacgtgattttttgtcgtaattttcatcaaac 7451475  T

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Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 148 - 282
Target Start/End: Complemental strand, 10201510 - 10201376
Alignment:
Q  148 cgtgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttctt 247  Q
    |||||||||| |||||||||||||| |||||||| || |||||||||||| ||||||| ||||||  |||||||  | || ||| |||||||| |||||     
T  10201510 cgtgtgtttggttttccgtttgcaacacacaaaatcacgtttgcacgctttctgatgtatttttgctgtgatttccaaaagctccaaatactagcttcta 10201411  T
Q  248 cgctaacgtgattttttgtcgtgatttccatcaaa 282  Q
    ||||||||||||||||||| |||||||||| ||||    
T  10201410 cgctaacgtgattttttgttgtgatttccaccaaa 10201376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 265
Target Start/End: Original strand, 27933478 - 27933599
Alignment:
Q  144 taagcgtgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaact 243  Q
    ||||||| ||| |||||| |||||||||| ||||||||||| |||| |||| || | ||| | |||||  ||||||||| |||| ||| |||||||| ||    
T  27933478 taagcgtatgtgtgatttcccgtttgcaacacacaaaagcacgtttacacgttttccgatatatttttaccgtgattttcagaagctctaaatactagct 27933577  T
Q  244 tcttcgctaacgtgattttttg 265  Q
    ||| |||||| |||||||||||    
T  27933578 tctacgctaatgtgattttttg 27933599  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 3947051 - 3946998
Alignment:
Q  165 gtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtga 218  Q
    |||||||| | |||||||||| |||||||| |||||||||||||||||||||||    
T  3947051 gtttgcaacaaacaaaagcatatttgcacgtttcctgatgtgtttttgtcgtga 3946998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 4613722 - 4613820
Alignment:
Q  165 gtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtgatttttt 264  Q
    |||||||| ||||||||| ||||||| ||| || | | |  ||||||| |||||||||||||| ||  || || ||||||||| ||||||||||||||||    
T  4613722 gtttgcaacacacaaaagtatgtttgtacgttttccgttaggtttttgccgtgatttttagaagctttaa-tattaacttctttgctaacgtgatttttt 4613820  T

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Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 48847594 - 48847723
Alignment:
Q  149 gtgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttc 248  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||| || | ||||  |||||| ||||||||| | || ||  ||||||||||||| ||    
T  48847594 gtgtgtttggttttccgtttgcaacatacaaaagcatgtttgcacgttttccgatgcatttttgccgtgattttcacaagcttcaaatactaacttcctc 48847693  T
Q  249 gctaacgtgattttttgtcgtgatttccat 278  Q
    ||||||||| ||||||| ||||||||||||    
T  48847694 gctaacgtggttttttgccgtgatttccat 48847723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 16118566 - 16118517
Alignment:
Q  233 aaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaa 282  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  16118566 aaatactagcttctacgctaacgtggttttttgtcgtgatttccatcaaa 16118517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 19322414 - 19322461
Alignment:
Q  233 aaatactaacttcttcgctaacgtgattttttgtcgtgatttccatca 280  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  19322414 aaatactaacttcttcgctaacgtggttttttgccatgatttccatca 19322461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 45675730 - 45675805
Alignment:
Q  208 ttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaac 283  Q
    ||||||||||||| | |||| ||  |||||||||||||| |||||||||| ||||||  ||||||||| |||||||    
T  45675730 ttttgtcgtgattctcagaaacttcaaatactaacttctacgctaacgtggttttttaccgtgatttctatcaaac 45675805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 622093 - 622011
Alignment:
Q  201 gatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaac 283  Q
    |||| ||||||| ||||||||||| || ||| |||||||| ||||| || ||||||| |||||||  ||||||| ||||||||    
T  622093 gatgcgtttttgccgtgatttttaaaagctccaaatactagcttctacgttaacgtggttttttgctgtgattttcatcaaac 622011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 32312970 - 32312832
Alignment:
Q  144 taagcgtgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaact 243  Q
    |||||||||||||| ||| ||||| |||| | ||||||||||||||||| |||| |  ||||||||||| ||||||||  | || ||| | |||||| ||    
T  32312970 taagcgtgtgtttggtttcccgttagcaacatacaaaagcatgtttgcatgctttccaatgtgtttttgccgtgatttccaaaagctccagatactagct 32312871  T
Q  244 tcttcgctaacgtgattttttgtcgtgatttccatcaaa 282  Q
    ||| ||||||| || ||||||| ||||||||||||||||    
T  32312870 tctacgctaacatggttttttgccgtgatttccatcaaa 32312832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 6368742 - 6368815
Alignment:
Q  149 gtgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttt 222  Q
    ||||||||| |||  ||||||||| ||| ||||||| |||||||||||||| ||||  |||||| |||||||||    
T  6368742 gtgtgtttggtttcacgtttgcaacacagaaaagcacgtttgcacgcttcccgatgcatttttgccgtgatttt 6368815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 3745213 - 3745341
Alignment:
Q  152 tgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcgct 251  Q
    |||||||||| |||||||||| | ||||||||| | || ||| |||| ||||  |||||||| | | ||||||||| ||| |||||||||||| | ||||    
T  3745213 tgtttgatttcccgtttgcaaaatacaaaagcacggttacacacttcttgatacgtttttgttgcgctttttagaaactccaaatactaacttatacgct 3745312  T
Q  252 aacgtgattttttgtcgtgatttccatca 280  Q
    |||||||| ||||||||||||||| ||||    
T  3745313 aacgtgatgttttgtcgtgatttctatca 3745341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 284
Target Start/End: Complemental strand, 12429873 - 12429755
Alignment:
Q  167 ttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtga-ttttttg 265  Q
    |||||| ||| ||||||| |||||||||||| |  |||  |||||| ||||||||| | || ||| |||| ||| ||| ||||||||||||| |||||||    
T  12429873 ttgcaacacataaaagcacgtttgcacgctttccaatgcatttttgccgtgattttgataagctctaaattctagcttattcgctaacgtgagttttttg 12429774  T
Q  266 tcgtgatttccatcaaaca 284  Q
     ||||||||||||||||||    
T  12429773 ccgtgatttccatcaaaca 12429755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 279
Target Start/End: Original strand, 37060269 - 37060398
Alignment:
Q  150 tgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcg 249  Q
    |||||||| ||||| |||||||| |||||||| |  ||||||| | || |  ||| ||| ||||| ||| |||||||| ||| |||||||||||||| |     
T  37060269 tgtgtttggttttctgtttgcaacacacaaaaacgcgtttgcatgttttcgaatgcgttattgtcatgaattttagaagctccaaatactaacttctaca 37060368  T
Q  250 ctaacgtgattttttgtcgtgatttccatc 279  Q
     |||| |||||||||| |||||||||||||    
T  37060369 ttaacatgattttttgccgtgatttccatc 37060398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 17759319 - 17759414
Alignment:
Q  151 gtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttct 246  Q
    ||||||| |||  |||||||||||||||||| |||||||||||| ||   ||||||||||||  |||||||| ||||  ||  |||||||||||||    
T  17759319 gtgtttggtttatcgtttgcaatacacaaaaacatgtttgcacgttttacgatgtgtttttgctgtgattttcagaagttctgaatactaacttct 17759414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 27475414 - 27475352
Alignment:
Q  202 atgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtgatttttt 264  Q
    |||||||||||||||||||||||||| || ||||||||| |||||    ||||||||||||||    
T  27475414 atgtgtttttgtcgtgatttttagaagcttaaaatactagcttctatattaacgtgatttttt 27475352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 15150857 - 15150807
Alignment:
Q  233 aaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaac 283  Q
    ||||||||||||||  ||||||||| || ||||||||||||| ||||||||    
T  15150857 aaatactaacttctatgctaacgtggttgtttgtcgtgattttcatcaaac 15150807  T

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Target: scaffold0065 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 283
Target Start/End: Original strand, 49460 - 49600
Alignment:
Q  143 ataagcgtgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaac 242  Q
    ||||| ||||||||| ||| |||||||||||| ||||||||| ||||||||||||    ||| ||| ||| | |||| | ||||| ||| ||||||||||    
T  49460 ataagtgtgtgtttggtttcccgtttgcaataaacaaaagcacgtttgcacgcttttcaatgcgttgttgccatgatctctagaagctctaaatactaac 49559  T
Q  243 ttcttcgctaacgtgattttttgtcgtgatttccatcaaac 283  Q
    |||| |||| || || |||||||||||||||| ||| ||||    
T  49560 ttctacgcttacatggttttttgtcgtgattttcattaaac 49600  T

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Target: scaffold0095 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 37948 - 37865
Alignment:
Q  201 gatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaaca 284  Q
    |||| ||||||| ||||||||| |||| ||| |||||||| |||||| ||||||||| ||||||| ||||||||||||| ||||    
T  37948 gatgcgtttttgccgtgattttcagaagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaaca 37865  T

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Target: scaffold0020 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 262
Target Start/End: Complemental strand, 155278 - 155159
Alignment:
Q  143 ataagcgtgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaac 242  Q
    ||||| ||||| ||| ||||||||||| || |||||||||||  |||||||| | |||||   ||||||| ||||||||| |||| ||| |||| ||| |    
T  155278 ataagtgtgtgattggttttccgtttgtaacacacaaaagcacatttgcacgttccctgaatcgtttttgccgtgattttcagaagctccaaatgctagc 155179  T
Q  243 ttcttcgctaacgtgatttt 262  Q
    ||||| ||||||||||||||    
T  155178 ttctttgctaacgtgatttt 155159  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 39396853 - 39396936
Alignment:
Q  201 gatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaaca 284  Q
    |||| ||||||| ||||||||| |||| ||| |||||||| |||||| ||||||||| ||||||| ||||||||||||| ||||    
T  39396853 gatgcgtttttgccgtgattttcagaagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaaca 39396936  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 283
Target Start/End: Complemental strand, 41146289 - 41146158
Alignment:
Q  152 tgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgatttttagaatctcaaaatactaacttcttcgct 251  Q
    |||||| ||| |||||||||| ||||||||||||  |||||||||| | |||   |||||| ||||||| | | || ||| ||||||||  |||| || |    
T  41146289 tgtttggtttcccgtttgcaacacacaaaagcatacttgcacgctttccgatacatttttgccgtgattctcataagctccaaatactagtttctacgtt 41146190  T
Q  252 aacgtgattttttgtcgtgatttccatcaaac 283  Q
    |||||| ||||||| ||||||||| |||||||    
T  41146189 aacgtggttttttgccgtgatttctatcaaac 41146158  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 29471850 - 29471776
Alignment:
Q  147 gcgtgtgtttgattttccgtttgcaatacacaaaagcatgtttgcacgcttcctgatgtgtttttgtcgtgattt 221  Q
    ||||||||||| |||||||||||||| | | |||||||  |||||| |||||| ||||  ||||||| |||||||    
T  29471850 gcgtgtgtttggttttccgtttgcaacatataaaagcacatttgcatgcttcccgatgcatttttgttgtgattt 29471776  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 36639053 - 36639128
Alignment:
Q  208 ttttgtcgtgatttttagaatctcaaaatactaacttcttcgctaacgtgattttttgtcgtgatttccatcaaac 283  Q
    ||||||||||| ||||||||  || ||||| |||||||| || |||| | ||||||||| ||||||| ||||||||    
T  36639053 ttttgtcgtgacttttagaaattccaaatattaacttctacgataacataattttttgttgtgattttcatcaaac 36639128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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