View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_low_2 (Length: 634)
Name: NF3614_low_2
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_low_2 |
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| [»] scaffold0142 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 143 - 352
Target Start/End: Complemental strand, 17365219 - 17365010
Alignment:
| Q |
143 |
tgttctgcaaagaaggaaaagcactaatcagtttagtgcgaaatgttggttcatcaacaaggttggtgaagtagtattttttccaccacaaagaaaagct |
242 |
Q |
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| T |
17365219 |
tgttctgcaaagaaggaaacgcattgatcaattttgtccgaaatactggctcatcaataaggttgttgaagtagtatttattccaccacaaagaaaagct |
17365120 |
T |
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| Q |
243 |
tttagtgcattcgtcagaagcttgaaaagagacatgcacgaagtctgagatgtgaccaacaagagagtgaatgcattgttgatattgagcctctgtcatc |
342 |
Q |
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| T |
17365119 |
ttcggtgcatttgtgggaagcttgaaaagagataggcacaaagtctgggacgtgaccaacaagagactgcatgcattgttgatattgagcctctgttatc |
17365020 |
T |
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| Q |
343 |
ttgtcgaaat |
352 |
Q |
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||||| |||| |
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| T |
17365019 |
ttgtccaaat |
17365010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 17365508 - 17365390
Alignment:
| Q |
1 |
atggaaccaagaagggtaattgggttcaaaagacaaggtgaagtctgcactaggtaatgctgggaatcttacccaataaaatggtaaagccattttgtat |
100 |
Q |
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| T |
17365508 |
atggaaccaaggagggtagttgggttcgaaagacaaagtgaagtctgcactaggtaatgctgggaatcttacgtagtaaaatgctaaagccattttgtat |
17365409 |
T |
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| Q |
101 |
ttggctagtacattgttca |
119 |
Q |
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| T |
17365408 |
ctggctagtgcgttgttca |
17365390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 295 - 408
Target Start/End: Complemental strand, 1021 - 908
Alignment:
| Q |
295 |
tgaccaacaagagagtgaatgcattgttgatattgagcctctgtcatcttgtcgaaatcatcttcataaatggatttgagaatcatagctatggaagcag |
394 |
Q |
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| T |
1021 |
tgaccaacaagagaatgaaggcattgttgatattgagcctctgacattttgtcgaaatcatcatcataaatcgtcttgagaatcatggctatagaagctg |
922 |
T |
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| Q |
395 |
gatggagctggctt |
408 |
Q |
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| T |
921 |
gatgaagctggctt |
908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 295 - 408
Target Start/End: Complemental strand, 4555 - 4442
Alignment:
| Q |
295 |
tgaccaacaagagagtgaatgcattgttgatattgagcctctgtcatcttgtcgaaatcatcttcataaatggatttgagaatcatagctatggaagcag |
394 |
Q |
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| T |
4555 |
tgaccaacaagagaatgaaggcattgttgatattgagcctctgacattttgtcgaaatcatcatcataaatcgtcttgagaatcatggctatagaagctg |
4456 |
T |
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| Q |
395 |
gatggagctggctt |
408 |
Q |
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| T |
4455 |
gatgaagctggctt |
4442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 12470 - 12426
Alignment:
| Q |
23 |
ggttcaaaagacaaggtgaagtctgcactaggtaatgctgggaat |
67 |
Q |
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| T |
12470 |
ggttcgaaagacaaagtgaagtctgcactaggcaatgctgggaat |
12426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 23006937 - 23006776
Alignment:
| Q |
120 |
catacctttagttttcttcgatatgttctgcaaagaaggaaaagcactaatcagtttagtgcgaaatgttggttcatcaacaaggttggtgaagtagtat |
219 |
Q |
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| T |
23006937 |
catacctttattttccttcgacttgctctgcaaagaaggaaaagcagtgatcaagttggtacgaaatgctggttcgtcgacaaggttggaaaggtagtat |
23006838 |
T |
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| Q |
220 |
tttttccaccacaaagaaaagcttttagtgcattcgtcagaagcttgaaaagagacatgcac |
281 |
Q |
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| T |
23006837 |
tttttcctccacaaagagaaactttctgtgcattcatttgaagcctgaaaagagacaggcac |
23006776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 119 - 313
Target Start/End: Complemental strand, 20839450 - 20839256
Alignment:
| Q |
119 |
acatacctttagttttcttcgatatgttctgcaaagaaggaaaagcactaatcagtttagtgcgaaatgttggttcatcaacaaggttggtgaagtagta |
218 |
Q |
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| T |
20839450 |
acatacctttatttttcttcgtcttactctgcaaagaaggaaaatcactgatcaggtttgcatgaaatgatgtttcgtcgacaaggttggaaaggtaata |
20839351 |
T |
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| Q |
219 |
ttttttccaccacaaagaaaagcttttagtgcattcgtcagaagcttgaaaagagacatgcacgaagtctgagatgtgaccaacaagagagtgaa |
313 |
Q |
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| T |
20839350 |
tttgttctaccacaaagaaaagcttttggtgcattcatgcgaagcataaaaagagataggcacaaagtctggaatatgaccagcaagagaatgaa |
20839256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 486
Target Start/End: Complemental strand, 20820310 - 20820152
Alignment:
| Q |
328 |
tgagcctctgtcatcttgtcgaaatcatcttcataaatggatttgagaatcatagctatggaagcaggatggagctggcttcagccaaactgccttgtta |
427 |
Q |
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| T |
20820310 |
tgagcctctcacatctcgtcaaaatcatcatcataaattgacttaagaatcatggctatagaggctggatggagttggcttagactaaattgccttgcta |
20820211 |
T |
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| Q |
428 |
ccaagtgtggatattagcctatcactttgtagtccgtcttgccaatagtgatccttaca |
486 |
Q |
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| T |
20820210 |
ctaggtgtgggtaataccatatcgccttataatccgtcttgtcagtagtgatccttaca |
20820152 |
T |
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