View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_low_28 (Length: 249)
Name: NF3614_low_28
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 30464540 - 30464302
Alignment:
| Q |
9 |
agcacagaataccaaacatacacttactacgaattaccagcaaaattttgaaaaattgcaatcttctattattttttattgtgtatctaccgttagggta |
108 |
Q |
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| T |
30464540 |
agcacataataccaaacatacacttactacgaattaccagcaaaattttgaaaaattgcaatcttctattattttttattgtgtatctaccgttagggta |
30464441 |
T |
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| Q |
109 |
cccgtgagctctttagacaaactgagactctttgtaaagagtggtaacaaaaagacagtgacagaaccttagctaaaaagttagtactacacatgatgaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30464440 |
cccgtgagctctttagacaaactgagactctttgtcaagagtggtaacaaaaagacagtgagagaaccttagctaaaaagttagtactacacatgatgaa |
30464341 |
T |
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| Q |
209 |
ctccagttacactgaatttaattaccaaatttagataaa |
247 |
Q |
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||| || |||||||||||||||||||||||||||||||| |
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| T |
30464340 |
ctctagctacactgaatttaattaccaaatttagataaa |
30464302 |
T |
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