View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_low_29 (Length: 230)
Name: NF3614_low_29
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40990011 - 40989792
Alignment:
| Q |
1 |
ttattttgtatagcacttatcgatttgtttcacaagcaatctaatataaaatcaccaattatatgtaaatatagttcatatatatcacaaattatgcgag |
100 |
Q |
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| T |
40990011 |
ttattttgtatagcacttatcgatttgtttcacaagcaatctaatatgaaatcaccaattatatgtaaatatagttcatatatatcacaaattatgcgag |
40989912 |
T |
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| Q |
101 |
gaaactattacgttttatttctcccacatgtttgtcgattttggacattattatactggaatgaagcaatgcgatgcaagtacactaaccgaaagttaga |
200 |
Q |
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| T |
40989911 |
gaaactattacgttttatttcccacacctgtttgtcgattctggacattattatactggaatgaagcaatgcgatgcaagtacactaaccgaaagttaga |
40989812 |
T |
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| Q |
201 |
gcatttcaaaggctcacatt |
220 |
Q |
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| T |
40989811 |
gcatttcaaaggctcacatt |
40989792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30951469 - 30951545
Alignment:
| Q |
1 |
ttattttgtatagcacttatcgatttgtttcacaagcaatctaatataaaat-caccaattatatgtaaatatagtt |
76 |
Q |
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| T |
30951469 |
ttattttctatagcacttatcgacttgttttacaagtaatctaatacagaatcccccaattataggtaaatatagtt |
30951545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 39812251 - 39812307
Alignment:
| Q |
139 |
ttttggacattattatactggaatgaagcaatgcgatgcaagtacactaaccgaaag |
195 |
Q |
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| T |
39812251 |
ttttggacataattacactaggatgaagcaatgcgatccaagtacactcaccgaaag |
39812307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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