View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_low_30 (Length: 226)
Name: NF3614_low_30
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_low_30 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 35027008 - 35026788
Alignment:
| Q |
6 |
agcaacaactcttgaaactgannnnnnnctaatggaccttcacttccatatgcacaaaacaccactgaaccaggtttgaatcccttaagccatgattccc |
105 |
Q |
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| T |
35027008 |
agcaacaactcttgaaactgatttttttctaatggaccttcacttccatatgcacaaaacaccacagaaccaggtttgaatcccttaagccatgattccc |
35026909 |
T |
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| Q |
106 |
atttttcatctaaagttgtttttggtgtttcaggtaacaaaggaccagaaagtagataaggttttccataaaaatttccaagaaattcagcatatggttc |
205 |
Q |
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| T |
35026908 |
atttttcatctaaagttgtttttggtgtttcaggtaacaaaggacctgaaagtagataaggttttccataaaaatttccaagaaattcagcatatggttc |
35026809 |
T |
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| Q |
206 |
atcaagttctttgcaaccttt |
226 |
Q |
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| T |
35026808 |
atcaagttctttgcaaccttt |
35026788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 35034017 - 35033797
Alignment:
| Q |
6 |
agcaacaactcttgaaactgannnnnnnctaatggaccttcacttccatatgcacaaaacaccactgaaccaggtttgaatcccttaagccatgattccc |
105 |
Q |
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| T |
35034017 |
agcaacaactctagaaactgatttttttctaatggaccttcacttccatatgcacaaaaaaccacagaaccattttcaaatcccttaagccatgaaatcc |
35033918 |
T |
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| Q |
106 |
atttttcatctaaagttgtttttggtgtttcaggtaacaaaggaccagaaagtagataaggttttccataaaaatttccaagaaattcagcatatggttc |
205 |
Q |
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| T |
35033917 |
atttttcctctagtgttgtatttgttggctcaggtaacacaggacctgaaagcagaacaggttttccaaaaacagtttcaatataatcagcatatggtcc |
35033818 |
T |
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| Q |
206 |
atcaagttctttgcaaccttt |
226 |
Q |
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| T |
35033817 |
atcaacttcattgcaaccttt |
35033797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 35011653 - 35011837
Alignment:
| Q |
42 |
ccttcacttccatatgcacaaaacaccactgaaccaggtttgaatcccttaagccatgattcccatttttcatctaaagttgtttttggtgtttcaggta |
141 |
Q |
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| T |
35011653 |
ccttcacttccatacgcacaaaaaaccacagaaccatgtttgaatccctcaagccatgttaaccatttttcctctaaagtagattttggtgcctcgggta |
35011752 |
T |
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| Q |
142 |
acaaaggaccagaaagtagataaggttttccataaaaatttccaagaaattcagcatatggttcatcaagttctttgcaaccttt |
226 |
Q |
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| T |
35011753 |
ataaaggacctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagtccatcaatttctctgcagccttt |
35011837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 35018671 - 35018863
Alignment:
| Q |
34 |
ctaatggaccttcacttccatatgcacaaaacaccactgaaccaggtttgaatcccttaagccatgattcccatttttcatctaaagttgtttttggtgt |
133 |
Q |
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| T |
35018671 |
ctaatggaccttcacttccatacgcacaaaaaatcacagaaccatgtttgaattccttaagccatgttaaccatttctcctctaaagtagcttttggtgg |
35018770 |
T |
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| Q |
134 |
ttcaggtaacaaaggaccagaaagtagataaggttttccataaaaatttccaagaaattcagcatatggttcatcaagttctttgcaaccttt |
226 |
Q |
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| T |
35018771 |
ctcaggtaacagaggacctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagaccatcaatctctctgcaaccttt |
35018863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 34998174 - 34998281
Alignment:
| Q |
48 |
cttccatatgcacaaaacaccactgaaccaggtttgaatcccttaagccatgattcccatttttcatctaaagttgtttttggtgtttcaggtaacaaag |
147 |
Q |
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| T |
34998174 |
cttccatatgcacaataaaccacgaaaccatgtttgaatcccttaagcc--gttaaccatttttcctctaaagtagattttggtgcctcaggtaataaag |
34998271 |
T |
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| Q |
148 |
gaccagaaag |
157 |
Q |
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| T |
34998272 |
gacctgaaag |
34998281 |
T |
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