View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_low_4 (Length: 509)
Name: NF3614_low_4
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 11076556 - 11076174
Alignment:
| Q |
19 |
acacggatgccaataacagacaccggtaataattgagatattttgaaaacaaaaacta-cggtttctattagtgactatccatagcctaagttggcatgt |
117 |
Q |
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| T |
11076556 |
acacggatgccaaaaacagacaccagtaataattgagatattttagaaaaaaaaactaacggtttctattattaactctccatagactaagttggcgtgt |
11076457 |
T |
|
| Q |
118 |
atatacctggagtgtcgataacattgacaatctgtccatcactcaactcagcagtctgcatttcacaagaggaagtaacaccggacgagctagccctcga |
217 |
Q |
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|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11076456 |
atttacctggagtgtcaataacattgacaatctgtccatcactcaactcagcagtctgcatttcacaagaggaagtgacaccggacgagctagccctcga |
11076357 |
T |
|
| Q |
218 |
cttaaaaacctttttcccaagaatactattaccggttgcactcttcccattgccggtacgtccaaccaaaaccactgtccgagcttcattagctgaaatc |
317 |
Q |
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| T |
11076356 |
cttaaaaacctttttcccaagaatactattaccggttgcactcttcccattgccggtacgtccaactaaaaccactgtccgagcttcattagctgaaatc |
11076257 |
T |
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| Q |
318 |
tgaacctcgctagctgatccagacgacgccaattcccaatcatcttcaacatagcttccccccatcataaattccaatcactg |
400 |
Q |
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| T |
11076256 |
tgaacctcgctagctgatccagacgacgccaattcccaatcatcttcaacatagcttccccccatcataaattccaatcactg |
11076174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 91 - 396
Target Start/End: Complemental strand, 11088557 - 11088252
Alignment:
| Q |
91 |
gactatccatagcctaagttggcatgtatatacctggagtgtcgataacattgacaatctgtccatcactcaactcagcagtctgcatttcacaagagga |
190 |
Q |
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|||| |||||||||||||||||| ||||| |||| ||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||||||||||||| |
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| T |
11088557 |
gactctccatagcctaagttggcgtgtatttaccaggagtgtcgataacattgataatatgtccatcactcagctcagctgtctgcatttcacaagagga |
11088458 |
T |
|
| Q |
191 |
agtaacaccggacgagctagccctcgacttaaaaacctttttcccaagaatactattaccggttgcactcttcccattgccggtacgtccaaccaaaacc |
290 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| |
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| T |
11088457 |
agtgacaccggacgagctagccctcgacttaaaaacctttttcccaagaatactattaccagttgcactcttcccattgccagtacgtccaaccaacacc |
11088358 |
T |
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| Q |
291 |
actgtccgagcttcattagctgaaatctgaacctcgctagctgatccagacgacgccaattcccaatcatcttcaacatagcttccccccatcataaatt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
11088357 |
actgtccgagcttcattagctgaaatctgaacctcgctagctgatccggacgacgctaactcccaatcatcttcaacatagcttccccccatcataaatt |
11088258 |
T |
|
| Q |
391 |
ccaatc |
396 |
Q |
| |
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|||||| |
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| T |
11088257 |
ccaatc |
11088252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 114 - 296
Target Start/End: Complemental strand, 11111162 - 11110980
Alignment:
| Q |
114 |
atgtatatacctggagtgtcgataacattgacaatctgtccatcactcaactcagcagtctgcatttcacaagaggaagtaacaccggacgagctagccc |
213 |
Q |
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|||||| |||||||| | || |||||||| ||| |||||||||| ||| |||| |||||||||||||| |||| || | |||||| |||||||||| |
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| T |
11111162 |
atgtatttacctggactatcaataacattaacagtctgtccatcgttcatctcacttgtctgcatttcacatgaggtggtgataccggaagagctagccc |
11111063 |
T |
|
| Q |
214 |
tcgacttaaaaacctttttcccaagaatactattaccggttgcactcttcccattgccggtacgtccaaccaaaaccactgtc |
296 |
Q |
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|||| || || || ||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |||| |
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| T |
11111062 |
tcgagttgaagacttttttcccaagaatactattaccagttgcactcttgccatttccggtacgaccaaccaaaaccaatgtc |
11110980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 121 - 291
Target Start/End: Complemental strand, 11128242 - 11128072
Alignment:
| Q |
121 |
tacctggagtgtcgataacattgacaatctgtccatcactcaactcagcagtctgcatttcacaagaggaagtaacaccggacgagctagccctcgactt |
220 |
Q |
| |
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|||||||||| || |||||||| ||||| ||||||||| ||| ||||| || | |||||| || || | || |||||||| ||||||| ||||||||| |
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| T |
11128242 |
tacctggagtatcaataacattcacaatttgtccatcattcagctcagttgttttcatttcgcatgaagtggtgacaccggaagagctagtcctcgactt |
11128143 |
T |
|
| Q |
221 |
aaaaacctttttcccaagaatactattaccggttgcactcttcccattgccggtacgtccaaccaaaacca |
291 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| |
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| T |
11128142 |
gaagaccttttttccaagaatactattaccggttgcactcttcccattcccagtacgaccaaacaaaacca |
11128072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 438 - 491
Target Start/End: Complemental strand, 11076136 - 11076083
Alignment:
| Q |
438 |
taatctaattattgcgatgatcataaactataaggaaatttcaataatcagtgt |
491 |
Q |
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|||||||||||||| || || ||||||||||||||||||||||||| ||||||| |
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| T |
11076136 |
taatctaattattgtgacgaccataaactataaggaaatttcaatattcagtgt |
11076083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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