View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3614_low_6 (Length: 447)
Name: NF3614_low_6
Description: NF3614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3614_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 3 - 426
Target Start/End: Complemental strand, 36252230 - 36251807
Alignment:
| Q |
3 |
gaattgatagaaacaggttttatagacttctgataggaaattgcattttcctgaacaattgtaacttgtattctcttttactaagatggttaaccaaatc |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36252230 |
gaattgatagaaacaggttttatagacttctgataggaaattgcattttcctgaacaattgtaacttgtattctcttttactaagatggttaaccaaatc |
36252131 |
T |
|
| Q |
103 |
agtaaagaatgtactttccctttgttttctcaaatacttgttctgcaattgcagcagcattaccatctatcttttttatctccaactgggccttctgacg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36252130 |
agtaaagaatgtactttccctttgttttctcaaatacttgttctgaaattgcagcagcattaccatctatcttttttatctccaactgggccttctgacg |
36252031 |
T |
|
| Q |
203 |
agaatcacctcccttctgtgcatcggcgataaaactgtcaaatccaattgctactgcagcttctgctttggctccataaaccaatctctgcttgatgtga |
302 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36252030 |
agaatcacttcccttctgtgcatcggcgataaaactgtcaaatccaattgctactgcagcttctgctttggctccataaaccaatctctgcttgatgtga |
36251931 |
T |
|
| Q |
303 |
atatacgacaaatatgtgatcaatttaacagtggttacagaaatgcatggtgtaaagagtaaataagaggggtttctgcttgccttaatttttgaaagat |
402 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36251930 |
atatgcgacaaatatgtgatcaatttaacagtggttacagaaatgcatggtgtaaagagtaaataagaggggattctgcttgccttaatttttgaaagat |
36251831 |
T |
|
| Q |
403 |
taatggcaccaaaacacattggac |
426 |
Q |
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| T |
36251830 |
taatggcaccaaaacacattggac |
36251807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 426
Target Start/End: Original strand, 36225615 - 36225800
Alignment:
| Q |
242 |
aaatccaattgctactgcagcttctgctttggctccataaaccaatctctgcttgatgtgaatatacgacaaatatgtgatcaatttaacagtggttaca |
341 |
Q |
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||||||||||| | |||| |||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |
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| T |
36225615 |
aaatccaattgatcctgccacttctgctgaggctccataaaccattctctgcttgatgcgaatataagacaaatatgtgatcaatttaacaaagattaca |
36225714 |
T |
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| Q |
342 |
gaaatgcatggtgtaaagagtaaataagaggggtttctg-cttgccttaatttttgaaagattaatggcaccaaaacacattggac |
426 |
Q |
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||| || || ||| ||||| |||| ||||| || | ||||||||||| | ||||| || ||| |||||||| |||||||||| |
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| T |
36225715 |
taaacgcgtgctgtgaagagaaaatgagaggcgtcgaagacttgccttaatatctgaaaaatgaatagcaccaaagcacattggac |
36225800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 36235297 - 36235217
Alignment:
| Q |
242 |
aaatccaattgctactgcagcttctgctttggctccataaaccaatctctgcttgatgtgaatatacgacaaatatgtgat |
322 |
Q |
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| T |
36235297 |
aaatccaattgatcttgcagcttctgctgtggctccataaaccattctctgcttgatgtgaatataagacaaatatgtgat |
36235217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 36235400 - 36235332
Alignment:
| Q |
121 |
cctttgttttctcaaatacttgttctgcaattgcagcagcattaccatctatcttttttatctccaact |
189 |
Q |
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||||||| |||||||| |||| |||||||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
36235400 |
cctttgtcttctcaaaaacttcttctgcaatttcagcagcaataccatctatcttttttatctcgaact |
36235332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 36225439 - 36225504
Alignment:
| Q |
30 |
ttctgataggaaattgcattttcctgaacaattgtaacttgtattctcttttactaagatggttaa |
95 |
Q |
| |
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||||||||| ||| || |||||||||||||| |||||||||||| ||||||||| | ||||||||| |
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| T |
36225439 |
ttctgatagtaaactggattttcctgaacaagtgtaacttgtatactcttttaccatgatggttaa |
36225504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 36225514 - 36225575
Alignment:
| Q |
123 |
tttgttttctcaaatacttgttctgcaattgcagcagcattaccatctatcttttttatctc |
184 |
Q |
| |
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||||| |||||||| |||| |||||||||| |||||||| |||||||||||||||| ||||| |
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| T |
36225514 |
tttgtcttctcaaacacttcttctgcaatttcagcagcaataccatctatctttttgatctc |
36225575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 36235496 - 36235431
Alignment:
| Q |
30 |
ttctgataggaaattgcattttcctgaacaattgtaacttgtattctcttttactaagatggttaac |
96 |
Q |
| |
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|||||||| ||||||| |||| ||||||||| |||||||||| | ||||||||| | |||||||||| |
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| T |
36235496 |
ttctgataagaaattgaattt-cctgaacaagtgtaacttgtgtactcttttaccatgatggttaac |
36235431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 366966 - 367031
Alignment:
| Q |
117 |
tttccctttgttttctcaaatacttgttctgcaattgcagcagcattaccatctatcttttttatc |
182 |
Q |
| |
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||||||||| | ||||||||||| |||||||||||| |||||||||| || ||||| ||||||||| |
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| T |
366966 |
tttccctttttcttctcaaatacctgttctgcaatttcagcagcattgccgtctattttttttatc |
367031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 367035 - 367092
Alignment:
| Q |
234 |
aaactgtcaaatccaattgctactgcagcttctgctttggctccataaaccaatctct |
291 |
Q |
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||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||| |
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| T |
367035 |
aaactatcaaatccaattgcccctgcaacttcatatttggctccataaaccaatctct |
367092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 367091 - 367127
Alignment:
| Q |
386 |
cttaatttttgaaagattaatggcaccaaaacacatt |
422 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||| |
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| T |
367091 |
cttaatttttgaaatattaatggcaccaaagcacatt |
367127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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